Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RPL6P29-201ENST00000414863 865 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AC006011.1-201ENST00000442758 349 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 PHBP16-201ENST00000446318 950 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 DNAJC19P1-201ENST00000455312 319 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 RPL7P32-201ENST00000457119 744 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 MTND6P32-201ENST00000457611 483 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 RNA5SP246-201ENST00000458909 119 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 RN7SL98P-201ENST00000462271 300 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 RPL35P6-201ENST00000490024 372 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 RPL7P24-201ENST00000493052 752 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 KRT19P6-201ENST00000510983 209 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 MIR2116-201ENST00000517221 80 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AC092747.2-201ENST00000545069 983 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 BNIP3P5-201ENST00000562290 498 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AC069366.1-201ENST00000583159 838 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 IPO5P1-202ENST00000600039 287 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 AL133247.2-201ENST00000603236 482 ntBASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC112Q8NEF3 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 MIR365B-201ENST00000362317 111 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC011933.1-201ENST00000413334 321 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 RPS26P47-201ENST00000427219 348 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AL358472.1-201ENST00000431295 329 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 BMS1P19-201ENST00000433925 393 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 CBX1P1-201ENST00000440184 427 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 EXTL2P1-201ENST00000446218 416 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC022431.1-201ENST00000450941 438 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC116533.1-201ENST00000459748 321 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 RPL7P1-201ENST00000468161 747 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 RPL7P9-201ENST00000468715 747 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AF213884.1-201ENST00000488102 463 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 RN7SL691P-201ENST00000494487 301 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 VTA1P2-201ENST00000520205 911 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 RFPL1S-203ENST00000539579 330 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 MIR3939-201ENST00000582614 106 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC067852.7-201ENST00000623270 535 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC124312.6-202ENST00000623624 418 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC011944.2-201ENST00000624440 683 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC134882.1-201ENST00000603738 1676 ntBASIC4.38□□□□□ -1.71
CCDC112Q8NEF3 AC116667.1-201ENST00000604855 2072 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC093719.1-202ENST00000392735 373 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 HLFP1-201ENST00000402375 499 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC127526.1-201ENST00000417526 366 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC004975.1-201ENST00000428733 208 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 SKP1P1-201ENST00000438081 489 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 ACTR3P2-201ENST00000439585 1257 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 HMGB1P37-201ENST00000439613 609 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 NDUFS5P3-201ENST00000450668 321 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AL161747.1-201ENST00000480068 358 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 NIPA2P2-201ENST00000496376 1083 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 KCTD9P2-201ENST00000512203 1013 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 RNA5SP49-201ENST00000516450 115 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC090819.1-201ENST00000523800 1111 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 OR7E10P-201ENST00000526420 991 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC105036.1-201ENST00000566222 271 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 MIR5684-201ENST00000585074 65 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC090948.2-201ENST00000607363 564 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 AC090971.4-201ENST00000560291 1800 ntBASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC112Q8NEF3 CUL4AP1-201ENST00000514750 1863 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms