Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 RNU6-560P-201ENST00000364007 108 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 SNORD113.2-201ENST00000364166 89 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 RNU6-707P-201ENST00000364647 95 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 BMS1P3-201ENST00000372011 932 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 RNU6-157P-201ENST00000383957 107 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC093719.1-202ENST00000392735 373 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 NRBF2P2-201ENST00000413087 861 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC005345.1-201ENST00000431868 217 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 GTF2IP7-202ENST00000436677 309 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 MTND5P2-201ENST00000442927 1142 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 BX248409.1-201ENST00000455497 255 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC011276.1-201ENST00000469688 323 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 OR5BM1P-201ENST00000512021 366 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 PTK2-220ENST00000520151 573 ntTSL 4 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AP000619.3-201ENST00000535634 1127 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC122688.1-201ENST00000541494 223 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC092747.2-201ENST00000545069 983 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 MIR4666A-201ENST00000580160 79 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AL031281.1-201ENST00000604049 488 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AP005137.2-201ENST00000609238 400 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC006133.1-201ENST00000617106 264 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC092608.3-201ENST00000625017 386 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 AC068620.4-201ENST00000636730 1182 ntBASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SMC1BQ8NDV3 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AL592148.3-201ENST00000608771 2646 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AL590240.1-201ENST00000334118 313 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 Y_RNA.192-201ENST00000363977 102 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 RNA5SP509-201ENST00000364577 119 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 TAF9BP1-201ENST00000396646 746 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AL590290.1-201ENST00000405336 380 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 TEX41-202ENST00000414256 604 ntTSL 5 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AC092393.1-201ENST00000439625 742 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 RPS3AP43-201ENST00000479743 781 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 GAPDHP39-201ENST00000481866 979 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AC025674.1-201ENST00000507074 324 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 MTND1P22-201ENST00000510572 951 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 SNORA67.7-201ENST00000516664 135 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 OR5M2P-201ENST00000529003 936 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AP001317.1-201ENST00000531194 960 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 ELOCP32-201ENST00000548625 324 ntBASIC6.03□□□□□ -1.44
SMC1BQ8NDV3 DUXAP1-201ENST00000556632 463 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms