Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RPL32P23-201ENST00000397237 405 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AL356057.1-202ENST00000402263 756 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 RPL21P43-201ENST00000425440 472 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 RSL24D1P8-201ENST00000434442 492 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 RPS3AP54-201ENST00000435535 734 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC007000.2-201ENST00000442564 487 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 TPRKBP1-201ENST00000456243 481 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 RPS27AP17-201ENST00000463344 455 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC053481.1-201ENST00000467217 306 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC112206.1-201ENST00000468416 477 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 OR5H4P-201ENST00000510851 923 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AP003730.1-201ENST00000524605 285 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC025884.1-201ENST00000556034 378 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC079610.2-201ENST00000604818 690 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AL118508.4-201ENST00000624142 1176 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 MIR3653-201ENST00000625572 110 ntBASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.5□□□□□ -1.69
HDDC3Q8N4P3 LINC00622-201ENST00000562811 1570 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC139713.2-215ENST00000641428 5037 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 OR5P1P-201ENST00000299512 925 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 RNA5SP366-201ENST00000365454 123 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 MIR554-201ENST00000384874 96 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL592291.1-201ENST00000403830 352 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 RN7SKP202-201ENST00000410439 330 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC004022.2-201ENST00000413824 193 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 VTA1P1-201ENST00000414044 866 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 TCEA1P4-201ENST00000415066 844 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 YY1P1-201ENST00000427625 668 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC006946.1-201ENST00000429106 328 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 ZFAND6P1-201ENST00000434138 605 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC105402.2-201ENST00000438503 358 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL691517.1-201ENST00000440833 1235 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL513321.1-201ENST00000441175 761 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 TDGF1P1-201ENST00000445734 527 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 RPL23AP23-201ENST00000452590 471 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL445433.1-201ENST00000457507 257 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 RNU6-362P-201ENST00000516736 90 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC023632.4-201ENST00000517783 191 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC090751.1-201ENST00000566966 267 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC015912.2-201ENST00000571053 181 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC067852.4-201ENST00000590314 478 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC005520.3-201ENST00000602874 370 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL591034.3-201ENST00000605511 685 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 OR6R2P-201ENST00000609216 300 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 CDRT1-208ENST00000630868 794 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 ATE1-AS1-202ENST00000636460 506 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 HSPA8P19-201ENST00000505359 1517 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 AL139811.1-201ENST00000424779 2299 ntBASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.49□□□□□ -1.69
HDDC3Q8N4P3 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HDDC3Q8N4P3 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms