Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC091390.2-201ENST00000432573 374 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 PPIAP17-201ENST00000438507 471 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC011742.2-201ENST00000443818 352 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 MTND3P16-201ENST00000452205 344 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC092451.1-201ENST00000480211 153 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC073522.1-201ENST00000483312 377 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC112184.1-201ENST00000505179 312 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 HMGB1P28-201ENST00000507778 552 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC036111.2-201ENST00000533247 901 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 ARL1-211ENST00000551828 776 ntTSL 5 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 CYCSP38-201ENST00000559840 322 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 MIR4701-201ENST00000583094 63 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC120057.5-201ENST00000623840 154 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AC097714.1-201ENST00000511272 1647 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AL391262.1-201ENST00000556558 1992 ntBASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
NPAS3Q8IXF0 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC074141.1-201ENST00000588129 2995 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC092821.3-202ENST00000641304 2767 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 MTCO1P25-201ENST00000414449 1799 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC010615.1-201ENST00000594254 1764 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RPL32P3-201ENST00000359025 275 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RNU6-266P-201ENST00000364225 107 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RNU6-662P-201ENST00000384253 104 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC005522.1-201ENST00000395416 346 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 MIR548K-201ENST00000408406 116 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RN7SKP281-201ENST00000410472 352 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC074085.1-201ENST00000413598 418 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC062016.2-201ENST00000420950 676 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AL953862.1-201ENST00000423016 168 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 BLOC1S2P1-201ENST00000428431 301 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 LSM1P1-201ENST00000438629 273 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AL590664.1-201ENST00000448065 339 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 OR1H1P-201ENST00000448731 937 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 PPIAP20-201ENST00000449839 135 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RNU7-63P-201ENST00000459054 62 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RPL12P30-201ENST00000488389 499 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC026784.1-201ENST00000507986 352 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 MTND1P19-201ENST00000511780 315 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RNU6-1213P-201ENST00000517075 94 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AP001189.2-201ENST00000527320 189 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC125612.1-201ENST00000547580 377 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AP005119.1-201ENST00000580956 292 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RN7SL475P-201ENST00000583379 298 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 TPMTP1-201ENST00000592307 737 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AL080312.2-201ENST00000613001 630 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 FTX_2.1-201ENST00000618816 94 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 AC131009.3-201ENST00000621809 287 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 OR52H1-202ENST00000641796 1061 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 MAPK10-365ENST00000641902 3825 ntBASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
NPAS3Q8IXF0 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms