Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 EIF4A1P11-201ENST00000451239 222 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.3□□□□□ -2.04
HSPG2P98160 RNU1-41P-201ENST00000516161 162 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 RNU1-48P-201ENST00000516400 162 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.3□□□□□ -2.04
HSPG2P98160 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC2.3□□□□□ -2.04
HSPG2P98160 MIR7111-201ENST00000619751 72 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC2.3□□□□□ -2.04
HSPG2P98160 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC2.3□□□□□ -2.04
HSPG2P98160 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 AC093698.1-201ENST00000423843 571 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC2.3□□□□□ -2.04
HSPG2P98160 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC2.3□□□□□ -2.04
HSPG2P98160 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC2.3□□□□□ -2.04
HSPG2P98160 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC022968.1-201ENST00000567372 442 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC2.3□□□□□ -2.04
HSPG2P98160 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
HSPG2P98160 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC2.3□□□□□ -2.04
HSPG2P98160 AL356489.2-201ENST00000566968 3528 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
HSPG2P98160 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
HSPG2P98160 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC2.3□□□□□ -2.04
HSPG2P98160 AL137918.1-201ENST00000624542 1922 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
HSPG2P98160 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC2.3□□□□□ -2.04
HSPG2P98160 AC026422.1-201ENST00000623961 452 ntBASIC2.3□□□□□ -2.04
HSPG2P98160 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HSPG2P98160 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC2.29□□□□□ -2.04
HSPG2P98160 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC2.29□□□□□ -2.04
HSPG2P98160 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HSPG2P98160 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC2.29□□□□□ -2.04
HSPG2P98160 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.29□□□□□ -2.04
HSPG2P98160 COTL1P1-201ENST00000422309 375 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.29□□□□□ -2.04
HSPG2P98160 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC2.29□□□□□ -2.04
HSPG2P98160 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC2.29□□□□□ -2.04
HSPG2P98160 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC2.29□□□□□ -2.04
HSPG2P98160 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC2.29□□□□□ -2.04
HSPG2P98160 AC084036.1-201ENST00000609190 508 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 AC010480.1-201ENST00000624823 684 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HSPG2P98160 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 RPL23AP69-201ENST00000431134 458 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 SETD6P1-201ENST00000444575 317 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 AC108751.2-201ENST00000469993 231 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 AC093663.1-201ENST00000497190 394 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC2.29□□□□□ -2.04
HSPG2P98160 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC2.29□□□□□ -2.04
HSPG2P98160 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 AL132656.3-201ENST00000606384 1595 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.29□□□□□ -2.04
HSPG2P98160 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 AL451044.1-201ENST00000604867 238 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC2.29□□□□□ -2.04
HSPG2P98160 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC2.29□□□□□ -2.04
HSPG2P98160 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC2.29□□□□□ -2.04
HSPG2P98160 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HSPG2P98160 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
HSPG2P98160 AC239868.2-201ENST00000564237 4527 ntBASIC2.29□□□□□ -2.04
HSPG2P98160 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC2.28□□□□□ -2.04
HSPG2P98160 RNA5SP50-201ENST00000363731 107 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AL359643.1-201ENST00000404109 423 ntBASIC2.28□□□□□ -2.04
HSPG2P98160 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms