Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC090877.1-201ENST00000561418 344 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 CYP2C60P-201ENST00000566088 139 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA3P55318 AC022655.2-201ENST00000577280 318 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA3P55318 AC006946.3-201ENST00000609791 756 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AC012409.3-201ENST00000611343 981 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA3P55318 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA3P55318 OR6C71P-202ENST00000641886 1107 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
FOXA3P55318 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA3P55318 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA3P55318 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA3P55318 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC116667.1-201ENST00000604855 2072 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA3P55318 AL158163.1-201ENST00000603915 1649 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA3P55318 PTMAP5-201ENST00000393073 333 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 CCL7-202ENST00000394627 696 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA3P55318 AL109941.1-201ENST00000401925 229 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 SNORA81-201ENST00000408493 178 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 RPS12P23-201ENST00000419579 400 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC104837.2-201ENST00000427236 424 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA3P55318 IGKV1OR9-2-201ENST00000431378 277 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA3P55318 TVP23BP2-201ENST00000455082 615 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC004801.2-202ENST00000463559 283 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 RN7SL354P-201ENST00000469282 294 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 RN7SL826P-201ENST00000479724 288 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA3P55318 RPL35P6-201ENST00000490024 372 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC010627.1-201ENST00000503819 1294 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC026784.1-201ENST00000507986 352 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 UBE2Q2P10-201ENST00000514854 900 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 Vault.1-201ENST00000516474 102 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC105233.3-201ENST00000531125 744 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA3P55318 PCNPP1-201ENST00000552501 511 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AL161713.1-201ENST00000555538 145 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA3P55318 MIR4310-201ENST00000582950 57 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA3P55318 PSMA6P4-201ENST00000603247 718 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC115621.1-201ENST00000604653 858 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 GMCL1P2-201ENST00000605230 823 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC010857.1-201ENST00000606398 594 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AC133644.2-201ENST00000608142 540 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 RNVU1-4-201ENST00000612985 164 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AL139089.1-201ENST00000620372 975 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC2.94□□□□□ -1.94
FOXA3P55318 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA3P55318 ASNSP1-204ENST00000641977 1664 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA3P55318 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA3P55318 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA3P55318 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.94□□□□□ -1.94
FOXA3P55318 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA3P55318 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA3P55318 AC109780.1-201ENST00000451768 1344 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
FOXA3P55318 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
FOXA3P55318 AL021368.2-201ENST00000606125 5352 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA3P55318 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA3P55318 OR4K15-201ENST00000305051 1216 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 CRP-203ENST00000368111 512 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA3P55318 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA3P55318 AC136624.1-201ENST00000400791 413 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 RN7SKP182-201ENST00000410772 298 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA3P55318 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA3P55318 RPL7AP73-201ENST00000413490 353 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 AC009237.5-201ENST00000414271 501 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA3P55318 GTF3AP1-201ENST00000416942 1004 ntBASIC2.93□□□□□ -1.94
FOXA3P55318 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA3P55318 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms