Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA1P49639 MIR7973-1-201ENST00000614683 76 ntBASIC4.13□□□□□ -1.75
HOXA1P49639 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA1P49639 MIR8080-201ENST00000622224 89 ntBASIC4.13□□□□□ -1.75
HOXA1P49639 AC005086.4-201ENST00000623065 213 ntBASIC4.13□□□□□ -1.75
HOXA1P49639 AC026422.1-201ENST00000623961 452 ntBASIC4.13□□□□□ -1.75
HOXA1P49639 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA1P49639 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA1P49639 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXA1P49639 SAMMSON-209ENST00000641222 1100 ntBASIC4.13□□□□□ -1.75
HOXA1P49639 MFSD8-245ENST00000641743 948 ntBASIC4.13□□□□□ -1.75
HOXA1P49639 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA1P49639 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA1P49639 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXA1P49639 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.13□□□□□ -1.75
HOXA1P49639 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA1P49639 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA1P49639 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA1P49639 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA1P49639 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA1P49639 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA1P49639 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA1P49639 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA1P49639 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA1P49639 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA1P49639 AC027290.2-201ENST00000623210 18662 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HOXA1P49639 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA1P49639 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
HOXA1P49639 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA1P49639 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA1P49639 SNORD113-6-201ENST00000363345 75 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 RNA5SP335-201ENST00000363817 110 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 Y_RNA.192-201ENST00000363977 102 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 RNA5SP510-201ENST00000364697 99 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 RNA5SP90-201ENST00000364801 99 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA1P49639 RNU6-317P-201ENST00000384031 107 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AL049545.1-201ENST00000401856 572 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 LYPLA1P3-201ENST00000402650 695 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AL592291.1-201ENST00000403830 352 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 U3.32-201ENST00000408116 212 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 SNORA11.5-201ENST00000408163 128 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 MIR1282-201ENST00000408865 101 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 RN7SKP59-201ENST00000410520 314 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA1P49639 COX6CP13-201ENST00000428703 226 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 NANOGP6-201ENST00000429190 847 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA1P49639 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 RPL7P28-201ENST00000437739 740 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 YWHAQP9-201ENST00000445891 512 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 COX6CP18-201ENST00000448769 222 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC079776.3-201ENST00000450665 370 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AL935212.3-201ENST00000450729 284 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA1P49639 ATG12P2-201ENST00000456830 416 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC026348.1-201ENST00000462549 1053 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 RPS26P28-201ENST00000470806 348 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC100832.1-201ENST00000471945 383 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 BET1P1-201ENST00000482276 359 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 RPS3AP22-201ENST00000488297 769 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC021146.8-201ENST00000507455 733 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 IGBP1P5-201ENST00000507524 1000 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA1P49639 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC008837.2-201ENST00000513076 418 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC005363.1-201ENST00000530779 351 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 OR4C2P-201ENST00000530855 1064 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA1P49639 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 NDUFB4P11-201ENST00000560510 395 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 SULT1C2P2-201ENST00000562517 294 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 RPL10P14-201ENST00000565265 298 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA1P49639 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA1P49639 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA1P49639 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA1P49639 AC068790.7-201ENST00000602347 528 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AL358072.1-201ENST00000604156 575 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AC108359.1-201ENST00000616451 1211 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 AL691477.1-201ENST00000624398 162 ntBASIC4.12□□□□□ -1.75
HOXA1P49639 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA1P49639 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA1P49639 AC135068.12-201ENST00000637370 931 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms