Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX2P35548 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX2P35548 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC5.23□□□□□ -1.57
MSX2P35548 AC008945.2-201ENST00000606056 604 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC090607.5-201ENST00000615692 224 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.23□□□□□ -1.57
MSX2P35548 AC073593.1-201ENST00000624500 411 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.23□□□□□ -1.57
MSX2P35548 OR52B5P-202ENST00000641118 1110 ntBASIC5.23□□□□□ -1.57
MSX2P35548 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
MSX2P35548 AC073869.8-201ENST00000641806 335 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC100871.1-201ENST00000507871 1456 ntBASIC5.23□□□□□ -1.57
MSX2P35548 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
MSX2P35548 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
MSX2P35548 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.23□□□□□ -1.57
MSX2P35548 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSX2P35548 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 AF287957.1-201ENST00000607368 1595 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AC011447.7-201ENST00000624228 1590 ntBASIC5.22□□□□□ -1.57
MSX2P35548 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.22□□□□□ -1.57
MSX2P35548 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 AC103591.2-201ENST00000265259 766 ntBASIC5.22□□□□□ -1.57
MSX2P35548 OR9K1P-201ENST00000326513 941 ntBASIC5.22□□□□□ -1.57
MSX2P35548 Y_RNA.813-201ENST00000364639 102 ntBASIC5.22□□□□□ -1.57
MSX2P35548 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 RNU6-98P-201ENST00000384173 107 ntBASIC5.22□□□□□ -1.57
MSX2P35548 RNU6-225P-201ENST00000384613 103 ntBASIC5.22□□□□□ -1.57
MSX2P35548 MIR16-1-201ENST00000385271 89 ntBASIC5.22□□□□□ -1.57
MSX2P35548 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
MSX2P35548 SNORD115-47-201ENST00000391226 86 ntBASIC5.22□□□□□ -1.57
MSX2P35548 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 AL009179.1-201ENST00000406085 265 ntBASIC5.22□□□□□ -1.57
MSX2P35548 MIR1282-201ENST00000408865 101 ntBASIC5.22□□□□□ -1.57
MSX2P35548 RNU2-42P-201ENST00000410697 113 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 AL009174.1-201ENST00000426577 416 ntBASIC5.22□□□□□ -1.57
MSX2P35548 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 AC069154.1-201ENST00000432914 542 ntBASIC5.22□□□□□ -1.57
MSX2P35548 RPL12P18-201ENST00000437175 325 ntBASIC5.22□□□□□ -1.57
MSX2P35548 HMGB1P31-201ENST00000437242 427 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 PRPF38AP1-201ENST00000451976 933 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL606490.1-201ENST00000452266 765 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 RPS27P20-201ENST00000492051 246 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL358832.1-201ENST00000497800 389 ntBASIC5.22□□□□□ -1.57
MSX2P35548 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 NIFKP7-201ENST00000503365 834 ntBASIC5.22□□□□□ -1.57
MSX2P35548 ENPP7P11-201ENST00000505915 627 ntBASIC5.22□□□□□ -1.57
MSX2P35548 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 AC098799.2-201ENST00000509466 868 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AC098976.1-201ENST00000513014 541 ntBASIC5.22□□□□□ -1.57
MSX2P35548 RPS27AP18-201ENST00000515536 459 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 SCARNA6.1-201ENST00000516989 238 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.22□□□□□ -1.57
MSX2P35548 AC011853.1-201ENST00000518911 454 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 OR5AK1P-201ENST00000524837 922 ntBASIC5.22□□□□□ -1.57
MSX2P35548 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC5.22□□□□□ -1.57
MSX2P35548 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.22□□□□□ -1.57
MSX2P35548 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.22□□□□□ -1.57
MSX2P35548 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 DPPA2P4-201ENST00000563717 878 ntBASIC5.22□□□□□ -1.57
MSX2P35548 MTCYBP13-201ENST00000578634 1093 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AC127024.5-201ENST00000580085 462 ntBASIC5.22□□□□□ -1.57
MSX2P35548 MIR4311-201ENST00000580794 100 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AC020914.6-201ENST00000594327 272 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 AP000769.2-201ENST00000602344 396 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AP003117.2-201ENST00000606010 545 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL136131.3-201ENST00000607600 188 ntBASIC5.22□□□□□ -1.57
MSX2P35548 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 AC079395.2-201ENST00000610982 737 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.22□□□□□ -1.57
MSX2P35548 MIR6861-201ENST00000618657 64 ntBASIC5.22□□□□□ -1.57
MSX2P35548 AL591926.1-201ENST00000620542 217 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms