Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC105252.1-201ENST00000503089 286 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 HMGN1P13-201ENST00000505795 138 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 FTH1P11-201ENST00000517577 551 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC022690.1-201ENST00000526681 550 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AP000648.1-201ENST00000529682 397 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC096996.1-201ENST00000563813 325 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 MIR4271-201ENST00000582451 67 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 MIR7853-201ENST00000584820 132 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC008536.2-201ENST00000607284 349 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC106028.5-201ENST00000610332 395 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC015922.4-201ENST00000612568 690 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 OR8G7P-201ENST00000616658 848 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC022509.4-201ENST00000621404 572 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC090574.1-201ENST00000623186 233 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC099063.3-201ENST00000642066 185 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC006484.1-201ENST00000435086 1884 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC000367.1-201ENST00000452711 1766 ntBASIC6.46□□□□□ -1.37
CCDC39Q9UFE4 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC39Q9UFE4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
CCDC39Q9UFE4 AC006206.1-201ENST00000544842 3387 ntBASIC6.46□□□□□ -1.37
CCDC39Q9UFE4 AL031595.2-201ENST00000624215 19071 ntBASIC6.46□□□□□ -1.37
CCDC39Q9UFE4 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.46□□□□□ -1.37
CCDC39Q9UFE4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC6.46□□□□□ -1.37
CCDC39Q9UFE4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 TMSB4XP2-201ENST00000335179 210 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 Y_RNA.372-201ENST00000365599 102 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 TAF9BP1-201ENST00000396646 746 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 FCF1P10-201ENST00000407590 479 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC099535.1-201ENST00000408928 371 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AL357752.1-201ENST00000412817 349 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AL035660.1-201ENST00000422041 222 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 OR4F13P-201ENST00000428478 931 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC239798.3-201ENST00000454459 408 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 UBTFL6-201ENST00000477929 1024 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 RN7SL570P-201ENST00000484405 292 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 RPS7P6-201ENST00000485777 579 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 IGLV3-24-201ENST00000517477 197 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC139365.2-201ENST00000517972 253 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 MAL2-205ENST00000521048 575 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC008147.3-201ENST00000548666 354 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 COX6CP7-201ENST00000597056 208 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC063977.5-201ENST00000601044 974 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC009233.1-201ENST00000616477 371 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 AC073569.3-201ENST00000619055 682 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 LINC01739-205ENST00000641890 573 ntBASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6.46□□□□□ -1.38
CCDC39Q9UFE4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 FGG-201ENST00000336098 1659 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms