Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AP001981.2-201ENST00000603241 418 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 AC133552.5-201ENST00000604266 540 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ABCC13-202ENST00000463099 3842 ntBASIC5.35□□□□□ -1.55
TDP1Q9NUW8 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TDP1Q9NUW8 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 NLRP3P1-201ENST00000622303 1785 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AL121839.2-201ENST00000565058 6943 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 RN7SKP95-201ENST00000362860 303 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 RNU6-623P-201ENST00000363143 105 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 TMSB4XP8-201ENST00000402089 135 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AL031577.2-201ENST00000404133 280 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AL138880.1-201ENST00000405824 642 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 TMSB4XP6-201ENST00000415187 135 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 COX6B1P1-201ENST00000415962 213 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 OR2AM1P-201ENST00000422137 422 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 TMSB4XP1-201ENST00000424567 135 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC007559.1-201ENST00000428736 355 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC096638.2-201ENST00000434965 711 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 RPL7P41-201ENST00000485823 957 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 NCOR1P1-202ENST00000486162 291 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC005912.1-201ENST00000495392 255 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 RN7SL591P-201ENST00000496150 292 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC140172.1-201ENST00000502928 141 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC112198.1-201ENST00000505369 1220 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AP003033.1-201ENST00000527244 415 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 ACTR3BP3-201ENST00000565577 979 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC010487.1-201ENST00000594408 1172 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC018714.1-201ENST00000605028 208 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 Z95327.3-201ENST00000610385 572 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC073114.1-201ENST00000612027 490 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC008083.4-201ENST00000615076 444 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 AC124312.6-202ENST00000623624 418 ntBASIC5.34□□□□□ -1.55
TDP1Q9NUW8 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
TDP1Q9NUW8 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
TDP1Q9NUW8 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.34□□□□□ -1.56
TDP1Q9NUW8 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.34□□□□□ -1.56
TDP1Q9NUW8 AC097461.1-201ENST00000568928 2821 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 DDX43P2-201ENST00000604753 1354 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RNU6-582P-201ENST00000362989 107 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RPL23AP47-201ENST00000408017 460 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 CHEK2P3-201ENST00000416118 248 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RHOT1P3-201ENST00000436571 331 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 PRPF38AP2-201ENST00000438179 851 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RPL34P20-201ENST00000442771 351 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 H2AFZP6-201ENST00000444403 394 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 TAF9P1-201ENST00000445421 515 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AL360221.1-201ENST00000445989 335 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 NOP56P2-201ENST00000447491 769 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 TPMTP4-201ENST00000450749 678 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC022431.1-201ENST00000450941 438 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms