Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC234771.5-201ENST00000600161 514 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AC007566.2-201ENST00000603642 413 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AL353600.1-201ENST00000608148 251 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 AL162574.2-201ENST00000614618 657 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 MTCO1P4-201ENST00000520516 1409 ntBASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.08□□□□□ -1.44
CHMP4AQ9BY43 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 ZNF137P-201ENST00000456718 1920 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 RNU6-1151P-201ENST00000384684 107 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 RNA5SP397-201ENST00000391323 118 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AC140479.3-201ENST00000418944 1126 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 EIF4HP2-201ENST00000424380 563 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AC004938.1-201ENST00000438468 308 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 RPL23AP33-201ENST00000442301 452 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 MTND1P33-201ENST00000446251 917 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AC104651.2-201ENST00000447549 528 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 DNAJC19P8-201ENST00000452887 259 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AL713922.2-201ENST00000619384 716 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AL136164.3-201ENST00000624429 3978 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 DHX40P1-201ENST00000588725 1412 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 CASC19-206ENST00000641028 1430 ntBASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CHMP4AQ9BY43 AC087190.4-201ENST00000574616 8334 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC100778.3-201ENST00000580060 1750 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 SNORA71.2-201ENST00000364941 134 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 TMSB4XP8-201ENST00000402089 135 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 RPL23AP48-201ENST00000406913 488 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 TMSB4XP6-201ENST00000415187 135 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 ATG4AP1-201ENST00000416893 538 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 TMSB4XP1-201ENST00000424567 135 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 FAR2P4-202ENST00000425399 584 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 OR4F13P-201ENST00000428478 931 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 USP9YP7-201ENST00000436723 430 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 Z80107.2-201ENST00000445127 392 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 RPL23AP15-201ENST00000450202 459 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 USP9YP32-201ENST00000452432 430 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC133473.1-201ENST00000455173 299 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC007016.1-201ENST00000512110 244 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 TOMM20P2-201ENST00000540082 421 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 BNIP3P1-201ENST00000547295 580 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC137768.1-201ENST00000549998 553 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC007424.1-203ENST00000554613 687 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC093510.2-201ENST00000562820 896 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 CYCSP40-201ENST00000575927 294 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC012254.4-201ENST00000588843 273 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AL353726.1-201ENST00000614041 1000 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC015914.2-201ENST00000618167 288 ntBASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms