Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC42Q96M95 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC42Q96M95 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC42Q96M95 AC005261.4-201ENST00000600047 1385 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC010740.1-201ENST00000417035 684 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 MTCO1P51-201ENST00000427672 1060 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 DNAJC19P7-201ENST00000428811 344 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AL353597.2-202ENST00000434901 373 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 BTG3P1-201ENST00000435859 716 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 TRBV12-2-201ENST00000489763 344 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AL132838.2-201ENST00000492041 314 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC231760.1-201ENST00000498002 260 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 SUMO2P20-201ENST00000520803 283 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 OR4A12P-201ENST00000530847 918 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC234771.5-201ENST00000600161 514 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 AL133247.2-201ENST00000603236 482 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AC096586.2-201ENST00000610260 441 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 AP006248.2-201ENST00000623309 592 ntBASIC4.19□□□□□ -1.74
CCDC42Q96M95 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC42Q96M95 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC42Q96M95 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC42Q96M95 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC42Q96M95 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 RPS4XP9-201ENST00000405151 780 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 RNA5SP239-201ENST00000410218 129 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AL645939.1-201ENST00000453429 797 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC105137.1-201ENST00000484355 562 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC099489.2-201ENST00000574976 260 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 VN1R79P-201ENST00000593540 513 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC091167.4-201ENST00000605079 184 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC004241.3-201ENST00000611728 517 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 AP000346.3-201ENST00000622821 210 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 AL451142.2-201ENST00000429076 2090 ntBASIC4.18□□□□□ -1.74
CCDC42Q96M95 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC42Q96M95 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
CCDC42Q96M95 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC42Q96M95 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC42Q96M95 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC42Q96M95 MTND4P10-201ENST00000446199 1363 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC42Q96M95 HSPA8P1-201ENST00000425843 1833 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC42Q96M95 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC4.17□□□□□ -1.74
CCDC42Q96M95 ENSAP1-201ENST00000392855 326 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC42Q96M95 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC42Q96M95 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC42Q96M95 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC42Q96M95 AC068305.1-201ENST00000497406 726 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 RNA5SP179-201ENST00000517284 121 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 AC087369.1-201ENST00000520775 996 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 TOMM20P2-201ENST00000540082 421 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC42Q96M95 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC42Q96M95 AC051619.2-201ENST00000559063 397 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 HNRNPCP4-201ENST00000571636 900 ntBASIC4.17□□□□□ -1.74
CCDC42Q96M95 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms