Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
RHBDL3P58872 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RHBDL3P58872 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
RHBDL3P58872 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
RHBDL3P58872 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AC139713.2-214ENST00000642059 1811 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC004656.1-201ENST00000568479 4951 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
RHBDL3P58872 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RHBDL3P58872 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
RHBDL3P58872 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AL590762.2-201ENST00000395798 571 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AL591848.1-201ENST00000413092 322 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 BTF3P8-201ENST00000414577 526 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 RPS7P9-201ENST00000414704 586 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 P2RY10P2-201ENST00000416730 913 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC004690.1-201ENST00000418216 328 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC013429.2-201ENST00000418798 781 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 PAICSP7-201ENST00000419829 962 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC008065.1-201ENST00000428525 348 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RHBDL3P58872 PRDX3P4-201ENST00000470828 747 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 RPL36AP41-201ENST00000493820 306 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC023424.1-201ENST00000496058 459 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC025674.1-201ENST00000507074 324 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AC004217.3-201ENST00000551552 878 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.65□□□□□ -1.5
RHBDL3P58872 MIR4458-201ENST00000578872 75 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AC010503.3-201ENST00000594355 540 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 RPL12P25-202ENST00000598100 674 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.65□□□□□ -1.5
RHBDL3P58872 AC112220.2-201ENST00000605513 533 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AP000255.1-201ENST00000610276 676 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC090772.4-201ENST00000623599 362 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 AC068620.4-201ENST00000636730 1182 ntBASIC5.65□□□□□ -1.5
RHBDL3P58872 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
RHBDL3P58872 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.65□□□□□ -1.51
RHBDL3P58872 AL592148.3-201ENST00000608771 2646 ntBASIC5.65□□□□□ -1.51
RHBDL3P58872 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
RHBDL3P58872 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
RHBDL3P58872 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
RHBDL3P58872 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
RHBDL3P58872 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
RHBDL3P58872 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
RHBDL3P58872 AL355852.1-201ENST00000454081 1771 ntBASIC5.65□□□□□ -1.51
RHBDL3P58872 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.51
RHBDL3P58872 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 ADAM5-202ENST00000399789 1942 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
RHBDL3P58872 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.64□□□□□ -1.51
RHBDL3P58872 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
RHBDL3P58872 SNORA62-201ENST00000365493 153 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
RHBDL3P58872 MIR122-201ENST00000385044 85 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 Y_RNA.578-201ENST00000390903 88 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 ARL4AP5-201ENST00000404372 599 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 RSL24D1P1-201ENST00000404972 493 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 NUP35P2-201ENST00000416748 943 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 NPM1P34-201ENST00000428821 893 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 ZNF736P11Y-201ENST00000442535 1213 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 ZNF736P12Y-201ENST00000443152 1243 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 RPS26P56-201ENST00000444468 240 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.64□□□□□ -1.51
RHBDL3P58872 ZNF736P4Y-201ENST00000454995 1243 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 ZFRP1-201ENST00000457579 2970 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.64□□□□□ -1.51
RHBDL3P58872 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.64□□□□□ -1.51
RHBDL3P58872 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.64□□□□□ -1.51
RHBDL3P58872 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.64□□□□□ -1.51
RHBDL3P58872 AC105031.1-201ENST00000518550 476 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.64□□□□□ -1.51
RHBDL3P58872 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC5.64□□□□□ -1.51
RHBDL3P58872 FKBP1BP1-201ENST00000553366 325 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.64□□□□□ -1.51
RHBDL3P58872 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.64□□□□□ -1.51
RHBDL3P58872 MIR4284-201ENST00000578924 81 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 AC067852.4-201ENST00000590314 478 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 AC099676.1-201ENST00000608886 657 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 AC104763.3-201ENST00000613765 618 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 AC004232.3-201ENST00000622977 525 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.64□□□□□ -1.51
RHBDL3P58872 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
RHBDL3P58872 AC074029.4-201ENST00000624796 1859 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
RHBDL3P58872 AC026951.1-201ENST00000559530 2459 ntBASIC5.64□□□□□ -1.51
RHBDL3P58872 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.64□□□□□ -1.51
RHBDL3P58872 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
RHBDL3P58872 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms