Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC110743.1-201ENST00000584870 478 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA3P55318 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA3P55318 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA3P55318 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA3P55318 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA3P55318 ATE1-AS1-202ENST00000636460 506 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA3P55318 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC2.97□□□□□ -1.93
FOXA3P55318 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
FOXA3P55318 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
FOXA3P55318 OTUD4P1-201ENST00000237841 3067 ntBASIC2.96□□□□□ -1.93
FOXA3P55318 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
FOXA3P55318 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.93
FOXA3P55318 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
FOXA3P55318 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA3P55318 MFSD8-236ENST00000641509 4050 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA3P55318 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA3P55318 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
FOXA3P55318 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA3P55318 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA3P55318 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC2.96□□□□□ -1.94
FOXA3P55318 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
FOXA3P55318 RPL23AP59-201ENST00000399415 461 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 RPL23AP27-201ENST00000415161 451 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC2.96□□□□□ -1.94
FOXA3P55318 AL356387.2-201ENST00000422272 243 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 RPL23AP4-201ENST00000427757 463 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC083863.1-201ENST00000438811 231 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA3P55318 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA3P55318 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA3P55318 AC006011.1-201ENST00000442758 349 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA3P55318 ARL2BPP10-201ENST00000446487 531 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 PPIAP20-201ENST00000449839 135 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC092691.2-201ENST00000461787 803 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 RPL23AP62-201ENST00000463396 453 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC010683.1-201ENST00000473673 378 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 HAUS1P1-201ENST00000505275 832 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA3P55318 RNA5SP519-201ENST00000516480 119 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 RN7SKP83-201ENST00000516512 178 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 RN7SKP209-201ENST00000516888 304 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 IGLVIV-65-201ENST00000517313 360 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA3P55318 SUMO2P20-201ENST00000520803 283 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA3P55318 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
FOXA3P55318 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA3P55318 AL121576.1-201ENST00000556055 276 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC020978.9-201ENST00000624380 1141 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 AC091905.1-201ENST00000624400 311 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 MTCO1P11-201ENST00000429111 1528 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA3P55318 EIF2AP4-201ENST00000424793 1781 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 USP33-201ENST00000357428 4155 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA3P55318 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA3P55318 OR56B2P-202ENST00000641377 2453 ntBASIC2.96□□□□□ -1.94
FOXA3P55318 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.95□□□□□ -1.94
FOXA3P55318 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 SYT14P1-202ENST00000600441 1448 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 BRAFP1-201ENST00000445336 2703 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
FOXA3P55318 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA3P55318 SNORA60-201ENST00000362396 134 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 U1.1-201ENST00000384101 164 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 RNU6-225P-201ENST00000384613 103 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 HMGB3P19-201ENST00000403971 560 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AL391417.1-201ENST00000404100 426 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 RAB9AP4-201ENST00000415230 609 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AC010740.1-201ENST00000417035 684 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 AC002075.2-201ENST00000425207 252 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 RPEP3-201ENST00000425462 676 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 TEX41-205ENST00000431734 529 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA3P55318 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA3P55318 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA3P55318 NANOGP10-201ENST00000453325 895 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 RPS3AP53-201ENST00000454716 778 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA3P55318 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA3P55318 RPL7AP52-201ENST00000458096 790 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 RNU6-1218P-201ENST00000458990 108 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AL049830.2-201ENST00000480072 201 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AC011037.1-201ENST00000483964 558 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 RN7SL691P-201ENST00000494487 301 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AC012170.1-201ENST00000495139 359 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 SNX5P1-201ENST00000505757 1041 ntBASIC2.95□□□□□ -1.94
FOXA3P55318 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 158.5 ms