Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 CR381670.1-201ENST00000624291 1693 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
FOXA1P55317 AL627171.1-201ENST00000618845 1308 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AC012020.1-201ENST00000624541 1728 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
FOXA1P55317 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
FOXA1P55317 RNU6-984P-201ENST00000363236 109 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AC019155.1-201ENST00000382242 574 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 EIF4A1P3-201ENST00000411521 244 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 COX6CP17-201ENST00000421389 185 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.7□□□□□ -1.82
FOXA1P55317 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXA1P55317 AC133473.1-201ENST00000455173 299 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AC010618.1-201ENST00000469924 477 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXA1P55317 NDUFB4P12-201ENST00000513465 390 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXA1P55317 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXA1P55317 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
FOXA1P55317 EIF4EP5-201ENST00000528228 640 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AC092747.2-201ENST00000545069 983 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXA1P55317 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.7□□□□□ -1.82
FOXA1P55317 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 AC026368.1-201ENST00000614934 690 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 BMS1P21-201ENST00000634565 365 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
FOXA1P55317 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
FOXA1P55317 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXA1P55317 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXA1P55317 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
FOXA1P55317 AL031985.3-201ENST00000565390 2449 ntBASIC3.7□□□□□ -1.82
FOXA1P55317 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXA1P55317 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.7□□□□□ -1.82
FOXA1P55317 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXA1P55317 AC010300.1-201ENST00000600671 5134 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXA1P55317 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXA1P55317 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA1P55317 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA1P55317 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA1P55317 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
FOXA1P55317 AL121657.1-201ENST00000327215 531 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 SNORA62-201ENST00000365493 153 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 AC007068.1-201ENST00000396690 844 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 RPL21P65-201ENST00000406094 466 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 OR5AW1P-201ENST00000426334 1006 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA1P55317 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA1P55317 RPS23P7-201ENST00000466210 444 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 AC010307.1-201ENST00000467206 836 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXA1P55317 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA1P55317 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 MIR4284-201ENST00000578924 81 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 AC015911.5-201ENST00000587076 451 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 AL133247.2-201ENST00000603236 482 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 AL591034.3-201ENST00000605511 685 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.69□□□□□ -1.82
FOXA1P55317 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.69□□□□□ -1.82
FOXA1P55317 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXA1P55317 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXA1P55317 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXA1P55317 AC073073.2-201ENST00000609827 2578 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXA1P55317 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXA1P55317 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA1P55317 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA1P55317 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA1P55317 RNU6-167P-201ENST00000384292 106 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
FOXA1P55317 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.68□□□□□ -1.82
FOXA1P55317 HSPD1P16-201ENST00000402302 394 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA1P55317 RPL23AP48-201ENST00000406913 488 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA1P55317 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA1P55317 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA1P55317 SKP1P1-201ENST00000438081 489 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms