Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
BRCA1P38398 ZNF602P-201ENST00000405929 924 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 REREP1Y-201ENST00000422655 198 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 REREP2Y-201ENST00000439103 200 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 AC092641.1-201ENST00000440229 772 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 RN7SL809P-201ENST00000482040 297 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 RPS3AP14-201ENST00000483907 780 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 AC010285.3-201ENST00000511668 676 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.69□□□□□ -1.66
BRCA1P38398 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.69□□□□□ -1.66
BRCA1P38398 AP005205.1-201ENST00000563503 508 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.69□□□□□ -1.66
BRCA1P38398 AC125494.3-201ENST00000602759 455 ntBASIC4.69□□□□□ -1.66
BRCA1P38398 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
BRCA1P38398 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
BRCA1P38398 BDP1P-201ENST00000582658 1990 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.68□□□□□ -1.66
BRCA1P38398 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
BRCA1P38398 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
BRCA1P38398 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
BRCA1P38398 GNG5P1-201ENST00000255500 204 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.68□□□□□ -1.66
BRCA1P38398 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.68□□□□□ -1.66
BRCA1P38398 AC008802.1-201ENST00000519121 791 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.68□□□□□ -1.66
BRCA1P38398 HIGD1AP18-201ENST00000520730 278 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 MIR4513-201ENST00000581077 86 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 MIR4672-201ENST00000583126 81 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.68□□□□□ -1.66
BRCA1P38398 AP003072.5-201ENST00000623872 773 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.68□□□□□ -1.66
BRCA1P38398 OR6C71P-202ENST00000641886 1107 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 AC125336.1-201ENST00000508893 2827 ntBASIC4.68□□□□□ -1.66
BRCA1P38398 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
BRCA1P38398 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
BRCA1P38398 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.67□□□□□ -1.66
BRCA1P38398 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 MARK2P15-201ENST00000432204 2186 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
BRCA1P38398 U3.26-201ENST00000391236 204 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.67□□□□□ -1.66
BRCA1P38398 MTCO1P45-201ENST00000431457 267 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 Z75741.1-201ENST00000446793 314 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 APOOP2-201ENST00000461561 539 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 DEFB109F-201ENST00000491870 277 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.67□□□□□ -1.66
BRCA1P38398 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.67□□□□□ -1.66
BRCA1P38398 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.67□□□□□ -1.66
BRCA1P38398 AC138907.10-201ENST00000623708 983 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.67□□□□□ -1.66
BRCA1P38398 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
BRCA1P38398 HSPD1P11-201ENST00000508643 1702 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 A2MP1-204ENST00000566278 4130 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC4.67□□□□□ -1.66
BRCA1P38398 AC005261.6-201ENST00000623072 1387 ntBASIC4.67□□□□□ -1.66
BRCA1P38398 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
BRCA1P38398 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
BRCA1P38398 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
BRCA1P38398 SNORA48.5-201ENST00000391143 135 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 MIR1251-201ENST00000408552 70 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 SKP1P3-201ENST00000429280 487 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AC097713.2-201ENST00000430199 356 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC017007.3-201ENST00000479865 435 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.66□□□□□ -1.66
BRCA1P38398 AC008759.1-201ENST00000589783 983 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.66□□□□□ -1.66
BRCA1P38398 RNU6-84P-201ENST00000607737 102 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 BNIP3P41-202ENST00000616656 861 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC4.66□□□□□ -1.66
BRCA1P38398 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 AC118273.1-201ENST00000525324 3006 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
BRCA1P38398 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.66□□□□□ -1.66
BRCA1P38398 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 EIF4A1P11-201ENST00000451239 222 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.66□□□□□ -1.66
BRCA1P38398 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
BRCA1P38398 GOLGA5P1-201ENST00000507317 980 ntBASIC4.66□□□□□ -1.66
BRCA1P38398 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms