Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USF1P22415 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USF1P22415 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.7□□□□□ -1.82
USF1P22415 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.7□□□□□ -1.82
USF1P22415 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USF1P22415 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC3.69□□□□□ -1.82
USF1P22415 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.69□□□□□ -1.82
USF1P22415 AC096656.1-201ENST00000623826 1364 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC008033.1-201ENST00000216407 1162 ntBASIC3.69□□□□□ -1.82
USF1P22415 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
USF1P22415 MIR331-201ENST00000362302 94 ntBASIC3.69□□□□□ -1.82
USF1P22415 RNU1-108P-201ENST00000362556 161 ntBASIC3.69□□□□□ -1.82
USF1P22415 RNA5SP502-201ENST00000362694 119 ntBASIC3.69□□□□□ -1.82
USF1P22415 MIR421-201ENST00000365696 85 ntBASIC3.69□□□□□ -1.82
USF1P22415 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USF1P22415 RNU6-1279P-201ENST00000383917 103 ntBASIC3.69□□□□□ -1.82
USF1P22415 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.69□□□□□ -1.82
USF1P22415 RNA5SP317-201ENST00000410176 116 ntBASIC3.69□□□□□ -1.82
USF1P22415 RNA5SP311-201ENST00000411290 116 ntBASIC3.69□□□□□ -1.82
USF1P22415 AL160275.2-201ENST00000412010 394 ntBASIC3.69□□□□□ -1.82
USF1P22415 RAC1P3-201ENST00000416129 580 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC062016.2-201ENST00000420950 676 ntBASIC3.69□□□□□ -1.82
USF1P22415 NPM1P24-201ENST00000428039 894 ntBASIC3.69□□□□□ -1.82
USF1P22415 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.69□□□□□ -1.82
USF1P22415 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.69□□□□□ -1.82
USF1P22415 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.69□□□□□ -1.82
USF1P22415 AL359073.1-201ENST00000448036 403 ntBASIC3.69□□□□□ -1.82
USF1P22415 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.69□□□□□ -1.82
USF1P22415 AC010469.1-201ENST00000463864 576 ntBASIC3.69□□□□□ -1.82
USF1P22415 RPL23AP2-201ENST00000471227 466 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC041039.1-201ENST00000485656 536 ntBASIC3.69□□□□□ -1.82
USF1P22415 RN7SL812P-201ENST00000493791 279 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.69□□□□□ -1.82
USF1P22415 AC018797.3-201ENST00000513388 1241 ntBASIC3.69□□□□□ -1.82
USF1P22415 RNA5SP315-201ENST00000516340 116 ntBASIC3.69□□□□□ -1.82
USF1P22415 RNA5SP312-201ENST00000517068 116 ntBASIC3.69□□□□□ -1.82
USF1P22415 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.69□□□□□ -1.82
USF1P22415 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.69□□□□□ -1.82
USF1P22415 OR8R1P-201ENST00000543943 764 ntBASIC3.69□□□□□ -1.82
USF1P22415 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.69□□□□□ -1.82
USF1P22415 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.69□□□□□ -1.82
USF1P22415 TVP23BP1-201ENST00000557500 617 ntBASIC3.69□□□□□ -1.82
USF1P22415 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.69□□□□□ -1.82
USF1P22415 AC008759.1-201ENST00000589783 983 ntBASIC3.69□□□□□ -1.82
USF1P22415 SLC25A36P1-201ENST00000590111 465 ntBASIC3.69□□□□□ -1.82
USF1P22415 BNIP3P33-201ENST00000598912 569 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.69□□□□□ -1.82
USF1P22415 AL049844.2-201ENST00000604280 628 ntBASIC3.69□□□□□ -1.82
USF1P22415 AL591034.3-201ENST00000605511 685 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC078899.5-201ENST00000612475 178 ntBASIC3.69□□□□□ -1.82
USF1P22415 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC139769.3-201ENST00000618383 175 ntBASIC3.69□□□□□ -1.82
USF1P22415 AC091905.2-201ENST00000623143 306 ntBASIC3.69□□□□□ -1.82
USF1P22415 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.69□□□□□ -1.82
USF1P22415 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.69□□□□□ -1.82
USF1P22415 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.69□□□□□ -1.82
USF1P22415 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.69□□□□□ -1.82
USF1P22415 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
USF1P22415 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.69□□□□□ -1.82
USF1P22415 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.69□□□□□ -1.82
USF1P22415 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
USF1P22415 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
USF1P22415 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USF1P22415 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USF1P22415 AL049555.1-201ENST00000562834 1933 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
USF1P22415 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
USF1P22415 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USF1P22415 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USF1P22415 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.68□□□□□ -1.82
USF1P22415 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USF1P22415 SPRR2C-201ENST00000290702 219 ntBASIC3.68□□□□□ -1.82
USF1P22415 RNU6-152P-201ENST00000384037 107 ntBASIC3.68□□□□□ -1.82
USF1P22415 MIR23B-201ENST00000384832 97 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.68□□□□□ -1.82
USF1P22415 AC009965.2-201ENST00000425328 970 ntBASIC3.68□□□□□ -1.82
USF1P22415 SEC63P1-201ENST00000425785 1258 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC073069.1-201ENST00000428657 441 ntBASIC3.68□□□□□ -1.82
USF1P22415 OR4C10P-201ENST00000434991 931 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC023512.1-201ENST00000444513 499 ntBASIC3.68□□□□□ -1.82
USF1P22415 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.68□□□□□ -1.82
USF1P22415 AC239809.1-201ENST00000450470 217 ntBASIC3.68□□□□□ -1.82
USF1P22415 VN1R32P-201ENST00000452234 905 ntBASIC3.68□□□□□ -1.82
USF1P22415 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.68□□□□□ -1.82
USF1P22415 RPL23AP12-201ENST00000467573 473 ntBASIC3.68□□□□□ -1.82
USF1P22415 RPL21P129-201ENST00000491732 478 ntBASIC3.68□□□□□ -1.82
USF1P22415 RPS6P4-201ENST00000494693 758 ntBASIC3.68□□□□□ -1.82
USF1P22415 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC3.68□□□□□ -1.82
USF1P22415 FABP5P6-201ENST00000510588 409 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC3.68□□□□□ -1.82
USF1P22415 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.68□□□□□ -1.82
USF1P22415 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.68□□□□□ -1.82
USF1P22415 RNA5SP446-201ENST00000515955 82 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC090151.1-201ENST00000520784 730 ntBASIC3.68□□□□□ -1.82
USF1P22415 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USF1P22415 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.68□□□□□ -1.82
USF1P22415 MIR4716-201ENST00000579628 84 ntBASIC3.68□□□□□ -1.82
USF1P22415 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC3.68□□□□□ -1.82
USF1P22415 AC079587.1-201ENST00000603846 277 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms