Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
COL6A3P12111 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
COL6A3P12111 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.86□□□□□ -1.79
COL6A3P12111 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL6A3P12111 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 PSMC1P13-201ENST00000458195 985 ntBASIC3.86□□□□□ -1.79
COL6A3P12111 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.86□□□□□ -1.79
COL6A3P12111 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A3P12111 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A3P12111 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A3P12111 EI24P3-201ENST00000399046 1062 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.85□□□□□ -1.79
COL6A3P12111 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.85□□□□□ -1.79
COL6A3P12111 RPL7P12-201ENST00000446719 750 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.85□□□□□ -1.79
COL6A3P12111 AL512310.1-201ENST00000548639 172 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 AC067852.4-201ENST00000590314 478 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.85□□□□□ -1.79
COL6A3P12111 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A3P12111 AL359693.1-201ENST00000614959 2407 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
COL6A3P12111 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC3.85□□□□□ -1.79
COL6A3P12111 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
COL6A3P12111 NPM1P11-201ENST00000417106 855 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 AC245054.1-201ENST00000420944 258 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 TXNP1-201ENST00000441872 371 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 SETD6P1-201ENST00000444575 317 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 TRBV12-1-201ENST00000479785 344 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.85□□□□□ -1.79
COL6A3P12111 AC019227.1-201ENST00000526902 510 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 DPPA3P2-201ENST00000553589 478 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 AC124312.4-201ENST00000605533 310 ntBASIC3.85□□□□□ -1.79
COL6A3P12111 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
COL6A3P12111 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL6A3P12111 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A3P12111 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL6A3P12111 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 ZNF90P1-201ENST00000480493 1951 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 VPS8-207ENST00000436792 5011 ntAPPRIS ALT1 TSL 2 BASIC3.84□□□□□ -1.79
COL6A3P12111 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 MIR199A2-201ENST00000385289 110 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 AL078604.1-201ENST00000404609 466 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.84□□□□□ -1.79
COL6A3P12111 TOMM20P4-201ENST00000427861 435 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.84□□□□□ -1.79
COL6A3P12111 AL157385.1-201ENST00000446973 268 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.84□□□□□ -1.79
COL6A3P12111 AL353726.1-201ENST00000614041 1000 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 CA1-225ENST00000626824 2405 ntTSL 5 BASIC3.84□□□□□ -1.79
COL6A3P12111 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC3.84□□□□□ -1.79
COL6A3P12111 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
COL6A3P12111 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
COL6A3P12111 AC007738.1-201ENST00000413892 348 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 AL161631.1-201ENST00000417933 486 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.84□□□□□ -1.79
COL6A3P12111 RPL31P50-201ENST00000471002 296 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 MIR4660-201ENST00000583549 74 ntBASIC3.84□□□□□ -1.79
COL6A3P12111 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL6A3P12111 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.84□□□□□ -1.79
COL6A3P12111 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A3P12111 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
COL6A3P12111 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A3P12111 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
COL6A3P12111 HYDIN2-203ENST00000614586 13885 ntBASIC3.84□□□□□ -1.8
COL6A3P12111 BCLAF1P2-201ENST00000624956 2609 ntBASIC3.84□□□□□ -1.8
COL6A3P12111 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A3P12111 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A3P12111 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A3P12111 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A3P12111 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL6A3P12111 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.84□□□□□ -1.8
COL6A3P12111 UBL5P3-201ENST00000475112 231 ntBASIC3.84□□□□□ -1.8
COL6A3P12111 AL451044.1-201ENST00000604867 238 ntBASIC3.84□□□□□ -1.8
COL6A3P12111 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.84□□□□□ -1.8
COL6A3P12111 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
COL6A3P12111 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.83□□□□□ -1.8
COL6A3P12111 MIR921-201ENST00000401133 56 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC3.83□□□□□ -1.8
COL6A3P12111 BNIP3P8-201ENST00000597863 560 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 AL592295.2-201ENST00000612578 206 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.83□□□□□ -1.8
COL6A3P12111 ZNF962P-201ENST00000443465 3140 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms