Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ZFRP1-201ENST00000457579 2970 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 RPS3AP25-201ENST00000411660 793 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 PPIAP3-201ENST00000450588 505 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC024224.1-201ENST00000538284 609 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC096553.1-201ENST00000605169 829 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC099669.2-201ENST00000616549 437 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC010608.2-201ENST00000624830 470 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 SNORA74C-2-201ENST00000411179 201 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC114878.2-201ENST00000604863 1251 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 PTMAP2-201ENST00000397627 327 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AL139095.1-201ENST00000404326 391 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 HSPE1P12-201ENST00000412576 301 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC104849.1-201ENST00000462623 405 ntBASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC1.24□□□□□ -2.21
SYNE1Q8NF91 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 MIR490-201ENST00000384865 128 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 ENSAP1-201ENST00000392855 326 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 MIR921-201ENST00000401133 56 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 SETP15-201ENST00000412724 337 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 SYF2P2-201ENST00000417620 583 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RPL12P46-201ENST00000436610 195 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RPS4XP18-201ENST00000495480 763 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 MIR4513-201ENST00000581077 86 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RN7SL435P-201ENST00000584418 282 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC092354.2-201ENST00000607786 514 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 FP236240.3-201ENST00000623061 327 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AL356121.2-201ENST00000624715 780 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 TRIM60P17-201ENST00000415181 719 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 EIF4EP1-201ENST00000422311 642 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RRM2P4-201ENST00000441721 562 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RPS20P21-201ENST00000466859 343 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AK5-208ENST00000478255 556 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RPS3AP6-201ENST00000484430 795 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 FTH1P24-201ENST00000503502 462 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 TRMT10BP1-201ENST00000519377 943 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC019278.1-201ENST00000623516 479 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RNU7-143P-201ENST00000516781 65 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC006064.5-201ENST00000541782 248 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AL606490.9-201ENST00000603331 271 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 AC008638.3-201ENST00000603341 463 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC1.23□□□□□ -2.21
SYNE1Q8NF91 USP9YP4-201ENST00000424401 1745 ntBASIC1.23□□□□□ -2.21
SYNE1Q8NF91 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms