Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 SNORA62.2-201ENST00000364672 152 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 RHOT1P2-201ENST00000366423 333 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 SNORA56-201ENST00000383966 129 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AL590806.1-201ENST00000415818 853 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AL807761.1-201ENST00000417622 171 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AL391219.1-201ENST00000422570 483 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 BX119904.1-201ENST00000432026 348 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 ELOCP18-201ENST00000434209 337 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 RPL7P1-201ENST00000468161 747 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 RPL7P9-201ENST00000468715 747 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 RPL29P14-201ENST00000495837 428 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 RNU7-143P-201ENST00000516781 65 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 IGHV3-63-201ENST00000518422 341 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC012417.1-201ENST00000582307 1039 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 ARF4P1-201ENST00000605447 541 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 AC103858.2-201ENST00000621471 543 ntBASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
CCDC65Q8IXS2 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC007064.3-201ENST00000422608 359 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 CHIAP3-201ENST00000423668 1133 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 NANOGP6-201ENST00000429190 847 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 ELOCP8-201ENST00000439309 332 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 ELOCP10-201ENST00000440624 327 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 ELOCP15-201ENST00000442090 332 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 RPL7P31-201ENST00000450192 724 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC239809.1-201ENST00000450470 217 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 RN7SL604P-201ENST00000492589 296 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 RPS27AP13-201ENST00000498403 237 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AP003730.1-201ENST00000524605 285 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC006116.5-201ENST00000591936 559 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 ELOCP34-201ENST00000604436 327 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC104662.1-201ENST00000604448 511 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC004241.3-201ENST00000611728 517 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AL445567.2-201ENST00000618935 498 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 IQCB2P-201ENST00000401788 1633 ntBASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
CCDC65Q8IXS2 AC106871.1-201ENST00000568324 3102 ntBASIC4.55□□□□□ -1.68
CCDC65Q8IXS2 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC65Q8IXS2 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms