Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL139089.1-201ENST00000620372 975 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AP003499.2-201ENST00000624100 483 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.73□□□□□ -1.81
FOXA1P55317 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.73□□□□□ -1.81
FOXA1P55317 AC009950.2-201ENST00000636548 183 ntBASIC3.73□□□□□ -1.81
FOXA1P55317 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC3.73□□□□□ -1.81
FOXA1P55317 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
FOXA1P55317 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
FOXA1P55317 AL450326.2-201ENST00000421913 1962 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC093909.5-201ENST00000621839 1799 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
FOXA1P55317 MIR199A2-201ENST00000385289 110 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AC244033.1-201ENST00000426826 870 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.72□□□□□ -1.81
FOXA1P55317 EIF2S2P3-201ENST00000428356 999 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 RPL7P4-203ENST00000430239 730 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AC016712.1-201ENST00000431088 378 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 SNORA71B-202ENST00000439232 272 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 VN1R96P-201ENST00000446052 858 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 NPM1P39-201ENST00000449818 867 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC3.72□□□□□ -1.81
FOXA1P55317 CCDC75P1-201ENST00000469247 791 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 NDUFA5P9-201ENST00000472609 340 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 PPIAP15-201ENST00000479662 484 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC005798.1-201ENST00000513715 387 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 SNORA31.9-201ENST00000516429 84 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC3.72□□□□□ -1.81
FOXA1P55317 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 NPM1P47-201ENST00000560843 856 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC141257.3-201ENST00000572906 215 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC012557.1-201ENST00000607115 611 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.72□□□□□ -1.81
FOXA1P55317 AC005962.2-201ENST00000611427 652 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 MLECP1-201ENST00000615893 709 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 AC090506.2-201ENST00000624521 419 ntBASIC3.72□□□□□ -1.81
FOXA1P55317 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
FOXA1P55317 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
FOXA1P55317 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.71□□□□□ -1.81
FOXA1P55317 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.81
FOXA1P55317 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.71□□□□□ -1.81
FOXA1P55317 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
FOXA1P55317 AC092111.2-201ENST00000611627 1414 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXA1P55317 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3.71□□□□□ -1.82
FOXA1P55317 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXA1P55317 AMZ2P2-201ENST00000406819 1057 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AL450992.3-201ENST00000413192 568 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXA1P55317 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXA1P55317 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXA1P55317 Z97055.1-201ENST00000419730 712 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AC013470.3-201ENST00000420252 1194 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 IPMKP1-201ENST00000425988 855 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 C4BPAP2-201ENST00000428434 478 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 AC098824.1-201ENST00000453565 980 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AL121877.1-201ENST00000453704 622 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 FTH1P2-201ENST00000466086 412 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AC107015.1-201ENST00000466902 747 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 STRADBP1-201ENST00000478954 1281 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXA1P55317 AC093267.1-201ENST00000489176 961 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AC083829.1-201ENST00000503756 657 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXA1P55317 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXA1P55317 HPRT1P1-201ENST00000509498 657 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.71□□□□□ -1.82
FOXA1P55317 SUMO2P20-201ENST00000520803 283 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AC138701.1-201ENST00000524329 714 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXA1P55317 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXA1P55317 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.71□□□□□ -1.82
FOXA1P55317 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXA1P55317 AL137849.1-201ENST00000604767 169 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 RNU4-89P-201ENST00000607443 133 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 AL356121.2-201ENST00000624715 780 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.71□□□□□ -1.82
FOXA1P55317 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 OR5AC4P-202ENST00000642086 985 ntBASIC3.71□□□□□ -1.82
FOXA1P55317 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXA1P55317 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
FOXA1P55317 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.71□□□□□ -1.82
FOXA1P55317 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms