Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MIR195-201ENST00000385194 87 ntBASIC5.53□□□□□ -1.52
MSH6P52701 ZNF602P-201ENST00000405929 924 ntBASIC5.53□□□□□ -1.52
MSH6P52701 AL391219.1-201ENST00000422570 483 ntBASIC5.53□□□□□ -1.52
MSH6P52701 AL139247.1-201ENST00000422768 325 ntBASIC5.53□□□□□ -1.52
MSH6P52701 OR6C71P-201ENST00000432580 913 ntBASIC5.53□□□□□ -1.52
MSH6P52701 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.53□□□□□ -1.52
MSH6P52701 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.53□□□□□ -1.52
MSH6P52701 AC017015.1-201ENST00000477387 286 ntBASIC5.53□□□□□ -1.52
MSH6P52701 NPM1P29-201ENST00000483112 803 ntBASIC5.53□□□□□ -1.52
MSH6P52701 RPS3AP6-201ENST00000484430 795 ntBASIC5.53□□□□□ -1.52
MSH6P52701 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.53□□□□□ -1.52
MSH6P52701 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.53□□□□□ -1.52
MSH6P52701 AC090136.1-201ENST00000520009 240 ntBASIC5.53□□□□□ -1.52
MSH6P52701 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.53□□□□□ -1.52
MSH6P52701 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.53□□□□□ -1.52
MSH6P52701 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.53□□□□□ -1.52
MSH6P52701 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
MSH6P52701 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH6P52701 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH6P52701 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
MSH6P52701 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH6P52701 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH6P52701 AL122016.1-201ENST00000403365 367 ntBASIC5.52□□□□□ -1.53
MSH6P52701 HMGB3P19-201ENST00000403971 560 ntBASIC5.52□□□□□ -1.53
MSH6P52701 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH6P52701 RBMY1KP-201ENST00000423480 476 ntBASIC5.52□□□□□ -1.53
MSH6P52701 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH6P52701 ARL4AP1-201ENST00000503220 705 ntBASIC5.52□□□□□ -1.53
MSH6P52701 AC108145.1-201ENST00000503770 153 ntBASIC5.52□□□□□ -1.53
MSH6P52701 RN7SKP289-201ENST00000517244 295 ntBASIC5.52□□□□□ -1.53
MSH6P52701 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH6P52701 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.52□□□□□ -1.53
MSH6P52701 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH6P52701 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH6P52701 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.52□□□□□ -1.53
MSH6P52701 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.52□□□□□ -1.53
MSH6P52701 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
MSH6P52701 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
MSH6P52701 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.51□□□□□ -1.53
MSH6P52701 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH6P52701 AC083843.3-201ENST00000623679 2186 ntBASIC5.51□□□□□ -1.53
MSH6P52701 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 RNA5SP399-201ENST00000364003 117 ntBASIC5.51□□□□□ -1.53
MSH6P52701 SNORA48.2-201ENST00000390926 124 ntBASIC5.51□□□□□ -1.53
MSH6P52701 SETP15-201ENST00000412724 337 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AC236972.1-201ENST00000433225 199 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.51□□□□□ -1.53
MSH6P52701 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.51□□□□□ -1.53
MSH6P52701 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.51□□□□□ -1.53
MSH6P52701 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH6P52701 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.51□□□□□ -1.53
MSH6P52701 OR5B10P-201ENST00000532869 642 ntBASIC5.51□□□□□ -1.53
MSH6P52701 RPL21P7-201ENST00000557463 483 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AC027176.2-201ENST00000559166 746 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AC008759.1-201ENST00000589783 983 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH6P52701 AL353600.1-201ENST00000608148 251 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AL031666.3-201ENST00000609320 1006 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AC019278.1-201ENST00000623516 479 ntBASIC5.51□□□□□ -1.53
MSH6P52701 AC073530.2-201ENST00000623987 261 ntBASIC5.51□□□□□ -1.53
MSH6P52701 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.51□□□□□ -1.53
MSH6P52701 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
MSH6P52701 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH6P52701 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH6P52701 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
MSH6P52701 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH6P52701 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH6P52701 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.5□□□□□ -1.53
MSH6P52701 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH6P52701 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.5□□□□□ -1.53
MSH6P52701 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH6P52701 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH6P52701 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.5□□□□□ -1.53
MSH6P52701 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH6P52701 APOOP2-201ENST00000461561 539 ntBASIC5.5□□□□□ -1.53
MSH6P52701 AC017007.3-201ENST00000479865 435 ntBASIC5.5□□□□□ -1.53
MSH6P52701 RN7SL809P-201ENST00000482040 297 ntBASIC5.5□□□□□ -1.53
MSH6P52701 RPL32P34-201ENST00000486380 400 ntBASIC5.5□□□□□ -1.53
MSH6P52701 AC005726.1-201ENST00000494679 427 ntBASIC5.5□□□□□ -1.53
MSH6P52701 ASNSP4-201ENST00000511103 447 ntBASIC5.5□□□□□ -1.53
MSH6P52701 MIR5187-201ENST00000583479 76 ntBASIC5.5□□□□□ -1.53
MSH6P52701 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH6P52701 AL451044.1-201ENST00000604867 238 ntBASIC5.5□□□□□ -1.53
MSH6P52701 AL513477.2-201ENST00000607858 568 ntBASIC5.5□□□□□ -1.53
MSH6P52701 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH6P52701 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.5□□□□□ -1.53
MSH6P52701 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
MSH6P52701 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
MSH6P52701 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
MSH6P52701 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSH6P52701 AC093591.2-201ENST00000565254 3843 ntBASIC5.5□□□□□ -1.53
MSH6P52701 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms