Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ZNF833P-201ENST00000424938 1494 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 RNA5SP306-201ENST00000411087 107 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 SYF2P2-201ENST00000417620 583 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 Z97055.1-201ENST00000419730 712 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 NPM1P34-201ENST00000428821 893 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 AL159987.2-201ENST00000432754 307 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC3.82□□□□□ -1.8
COL5A1P20908 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.82□□□□□ -1.8
COL5A1P20908 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.82□□□□□ -1.8
COL5A1P20908 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 AC012417.1-201ENST00000582307 1039 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 MIR5187-201ENST00000583479 76 ntBASIC3.82□□□□□ -1.8
COL5A1P20908 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.82□□□□□ -1.8
COL5A1P20908 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
COL5A1P20908 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC3.82□□□□□ -1.8
COL5A1P20908 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.82□□□□□ -1.8
COL5A1P20908 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.82□□□□□ -1.8
COL5A1P20908 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL5A1P20908 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
COL5A1P20908 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL5A1P20908 TCEA1P2-201ENST00000420496 906 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A1P20908 AC104849.1-201ENST00000462623 405 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 UBE2DNL-203ENST00000474922 222 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A1P20908 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A1P20908 NPM1P47-201ENST00000560843 856 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.81□□□□□ -1.8
COL5A1P20908 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.81□□□□□ -1.8
COL5A1P20908 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A1P20908 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A1P20908 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A1P20908 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL5A1P20908 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL5A1P20908 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 DDX18P6-201ENST00000450119 1997 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
COL5A1P20908 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A1P20908 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A1P20908 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A1P20908 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL5A1P20908 RNU1-108P-201ENST00000362556 161 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A1P20908 NPM1P38-201ENST00000403835 865 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 AC245052.5-201ENST00000416320 649 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A1P20908 MAPRE1P3-201ENST00000435438 796 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.81□□□□□ -1.8
COL5A1P20908 RPS3AP46-201ENST00000448352 682 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 PDSS1P2-201ENST00000449397 678 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC3.81□□□□□ -1.8
COL5A1P20908 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A1P20908 AC092691.2-201ENST00000461787 803 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 RPL31P61-201ENST00000496160 376 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 RN7SKP18-201ENST00000516005 275 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.81□□□□□ -1.8
COL5A1P20908 AC022968.1-201ENST00000567372 442 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 AC016839.1-201ENST00000578162 867 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 AC083843.2-201ENST00000568248 6253 ntBASIC3.81□□□□□ -1.8
COL5A1P20908 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
COL5A1P20908 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC3.8□□□□□ -1.8
COL5A1P20908 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 CROT-204ENST00000442291 1993 ntTSL 5 BASIC3.8□□□□□ -1.8
COL5A1P20908 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.8□□□□□ -1.8
COL5A1P20908 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
COL5A1P20908 RNVU1-14-201ENST00000384770 164 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 RPS7P15-201ENST00000415804 584 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 AC236972.1-201ENST00000433225 199 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL5A1P20908 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.8□□□□□ -1.8
COL5A1P20908 RNU7-143P-201ENST00000516781 65 ntBASIC3.8□□□□□ -1.8
COL5A1P20908 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms