Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC017104.5-201ENST00000637647 639 ntBASIC5.6□□□□□ -1.51
COL3A1P02461 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.6□□□□□ -1.51
COL3A1P02461 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL3A1P02461 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL3A1P02461 AC116667.1-201ENST00000604855 2072 ntBASIC5.6□□□□□ -1.51
COL3A1P02461 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL3A1P02461 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.6□□□□□ -1.51
COL3A1P02461 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL3A1P02461 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL3A1P02461 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
COL3A1P02461 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
COL3A1P02461 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL3A1P02461 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.59□□□□□ -1.51
COL3A1P02461 SNORD116-8-201ENST00000384365 95 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 RNA5SP372-201ENST00000390836 115 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 RPL21P65-201ENST00000406094 466 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC5.59□□□□□ -1.51
COL3A1P02461 MTCYBP12-201ENST00000440559 1134 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.59□□□□□ -1.51
COL3A1P02461 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC5.59□□□□□ -1.51
COL3A1P02461 RPL23AP2-201ENST00000471227 466 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AC104982.1-201ENST00000478775 574 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC5.59□□□□□ -1.51
COL3A1P02461 KRT19P6-201ENST00000510983 209 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.59□□□□□ -1.51
COL3A1P02461 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC5.59□□□□□ -1.51
COL3A1P02461 AC026402.1-201ENST00000513642 170 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AC008494.2-201ENST00000514544 370 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.59□□□□□ -1.51
COL3A1P02461 GLRXP2-201ENST00000555594 321 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.59□□□□□ -1.51
COL3A1P02461 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL3A1P02461 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.59□□□□□ -1.51
COL3A1P02461 AC010620.1-201ENST00000601088 1102 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AL358072.1-201ENST00000604156 575 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AC002487.1-201ENST00000604565 994 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AL138721.1-201ENST00000616756 179 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 AC091304.6-201ENST00000619761 202 ntBASIC5.59□□□□□ -1.51
COL3A1P02461 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC5.59□□□□□ -1.51
COL3A1P02461 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL3A1P02461 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL3A1P02461 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL3A1P02461 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.59□□□□□ -1.52
COL3A1P02461 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL3A1P02461 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 RN7SKP227-201ENST00000364445 330 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.58□□□□□ -1.52
COL3A1P02461 RPS26P8-201ENST00000393490 348 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
COL3A1P02461 PPIAP31-201ENST00000405422 495 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 RNU6-564P-201ENST00000410983 104 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC5.58□□□□□ -1.52
COL3A1P02461 RAB9AP4-201ENST00000415230 609 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.58□□□□□ -1.52
COL3A1P02461 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.58□□□□□ -1.52
COL3A1P02461 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 AL009048.1-201ENST00000450437 298 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.58□□□□□ -1.52
COL3A1P02461 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.58□□□□□ -1.52
COL3A1P02461 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
COL3A1P02461 AL132838.2-201ENST00000492041 314 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.58□□□□□ -1.52
COL3A1P02461 AC108064.1-201ENST00000513791 460 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC5.58□□□□□ -1.52
COL3A1P02461 VTA1P2-201ENST00000520205 911 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC5.58□□□□□ -1.52
COL3A1P02461 OR4U1P-201ENST00000554958 912 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 MTND3P13-201ENST00000574391 343 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 AC231759.1-201ENST00000616455 597 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 ZYXP1-201ENST00000617638 118 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.58□□□□□ -1.52
COL3A1P02461 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
COL3A1P02461 AC104118.1-201ENST00000607625 1589 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL3A1P02461 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL3A1P02461 Y_RNA.505-201ENST00000384489 102 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 MIR7-1-201ENST00000384871 110 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 VN1R8P-201ENST00000407739 893 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 AL592310.1-201ENST00000414330 671 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.58□□□□□ -1.52
COL3A1P02461 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.58□□□□□ -1.52
COL3A1P02461 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.58□□□□□ -1.52
COL3A1P02461 THAP5P1-201ENST00000439089 262 ntBASIC5.58□□□□□ -1.52
COL3A1P02461 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms