Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC140479.3-201ENST00000418944 1126 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC092013.1-201ENST00000438795 332 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 RPL7P61-201ENST00000451721 751 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 HMGB1P26-201ENST00000452520 628 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC091685.2-201ENST00000454924 864 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 RN7SL93P-201ENST00000463035 293 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC063943.1-201ENST00000465434 453 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 RPL23AP12-201ENST00000467573 473 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 RN7SL738P-201ENST00000470264 297 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC025459.1-201ENST00000504072 156 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 BTF3L4P4-201ENST00000506381 449 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 RNU6ATAC24P-201ENST00000516811 135 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 MORF4L1P3-201ENST00000525966 950 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC091515.1-201ENST00000548110 679 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 RN7SL652P-201ENST00000577769 300 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 MIR3667-201ENST00000581025 74 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AL031320.1-201ENST00000604177 357 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 Z82195.1-201ENST00000604558 398 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 MIR7155-201ENST00000615925 56 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 MIR6719-201ENST00000622428 87 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC112694.2-201ENST00000623697 768 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 AL133412.1-201ENST00000380194 2992 ntBASIC3.2□□□□□ -1.9
HLA-DQA1P01909 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.2□□□□□ -1.9
HLA-DQA1P01909 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 USP9YP4-201ENST00000424401 1745 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RNU1-18P-201ENST00000363062 164 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 SNORA51.8-201ENST00000384234 132 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC013404.1-201ENST00000413068 249 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AL158073.1-201ENST00000426848 1104 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AL132765.1-201ENST00000434165 553 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RPS20P1-201ENST00000434853 354 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 UBE2V1P3-201ENST00000439651 417 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RPL12P3-201ENST00000440080 396 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RPL34P26-201ENST00000445636 354 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 OR52J1P-201ENST00000450596 932 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AURKAPS2-201ENST00000454983 333 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC089999.1-201ENST00000460336 374 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RN7SL610P-201ENST00000463845 291 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RN7SL329P-201ENST00000467740 299 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC083982.1-201ENST00000485679 344 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RPS27AP16-201ENST00000492222 470 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RN7SL812P-201ENST00000493791 279 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 NDUFB5P1-201ENST00000508134 564 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 IGKV2D-23-201ENST00000518179 286 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 IGHV3-32-201ENST00000519182 355 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AP001922.4-201ENST00000526967 290 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 GCSHP4-201ENST00000538792 439 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 RFPL1S-203ENST00000539579 330 ntBASIC3.19□□□□□ -1.9
HLA-DQA1P01909 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.19□□□□□ -1.9
HLA-DQA1P01909 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 177.6 ms