Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AL136164.3-201ENST00000624429 3978 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC022893.2-201ENST00000564832 3296 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 RNU5B-4P-201ENST00000363508 111 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 PRELID3BP11-201ENST00000414230 479 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AL590139.1-201ENST00000416267 400 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 IPMKP1-201ENST00000425988 855 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC105402.2-201ENST00000438503 358 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AL645931.1-201ENST00000439737 410 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AL050341.1-201ENST00000447743 313 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 CDC42P1-201ENST00000456658 548 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 MTND2P39-201ENST00000457230 764 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC022795.1-201ENST00000473808 480 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC015724.1-201ENST00000478577 156 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 RNU2-30P-201ENST00000516209 141 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 OR5AN2P-201ENST00000534535 896 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 CYB5AP5-201ENST00000549779 389 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC008507.2-201ENST00000588402 1176 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 OR7A19P-201ENST00000608051 733 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AL136295.6-201ENST00000610486 658 ntBASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
VPS28Q9UK41 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.87□□□□□ -1.63
VPS28Q9UK41 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 LINC01109-201ENST00000603837 3081 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 RNU5B-1-201ENST00000363286 116 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 RNA5SP391-201ENST00000363456 119 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 RPS16P5-201ENST00000406501 404 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AL591848.1-201ENST00000413092 322 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 GAPDHP49-201ENST00000421421 961 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AL645608.4-201ENST00000423619 154 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 EIF4HP2-201ENST00000424380 563 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 HMGB1P45-201ENST00000435986 653 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 RPS26P2-201ENST00000440331 348 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC073264.2-201ENST00000448886 166 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 NIP7P2-201ENST00000485801 544 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC008897.1-201ENST00000494006 347 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 MTND3P3-201ENST00000505004 126 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 TCP11X3P-202ENST00000514289 1254 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 IGJP1-201ENST00000522682 475 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 MTND5P21-201ENST00000531961 522 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AP006289.1-201ENST00000538089 277 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 CR383656.6-201ENST00000550518 394 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 AP000919.1-202ENST00000581139 1264 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC091488.1-201ENST00000604239 660 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC133552.5-201ENST00000604266 540 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 MIR6780A-201ENST00000615089 68 ntBASIC4.86□□□□□ -1.63
VPS28Q9UK41 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms