Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 LAP3P1-201ENST00000403648 294 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 MIR1303-201ENST00000408625 86 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC069285.2-201ENST00000440210 275 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC011753.3-201ENST00000443436 406 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC006967.1-201ENST00000467608 589 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC093663.2-201ENST00000484625 313 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 RNA5SP446-201ENST00000515955 82 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 IGLV3-26-201ENST00000520756 302 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC090151.1-201ENST00000520784 730 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC124068.1-201ENST00000563131 678 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 MIR4691-201ENST00000583764 85 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AL049634.3-201ENST00000604968 457 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC113194.1-201ENST00000606037 500 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC015813.4-201ENST00000610469 179 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AL353726.1-201ENST00000614041 1000 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC121761.2-201ENST00000617300 689 ntBASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ZNF540Q8NDQ6 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC026951.1-201ENST00000559530 2459 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP87-201ENST00000384155 118 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RPS15AP40-201ENST00000419621 391 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AL360081.1-201ENST00000428299 555 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RPL21P91-201ENST00000429231 479 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RPS26P40-201ENST00000435209 294 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC112498.1-201ENST00000444401 332 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RPS27AP15-201ENST00000447672 466 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC010469.1-201ENST00000463864 576 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC078817.1-201ENST00000492623 435 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RPL7L1P13-201ENST00000511702 739 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC110775.1-201ENST00000513721 462 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RN7SKP96-201ENST00000516948 297 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 RNU4-60P-201ENST00000517239 135 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC008694.2-201ENST00000517591 306 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 HIGD1AP5-201ENST00000529959 259 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC091178.1-203ENST00000584586 279 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms