Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 SETP8-201ENST00000435341 628 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 YWHAZP7-201ENST00000436906 631 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 CYCSP12-201ENST00000437729 300 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL390119.1-201ENST00000440329 312 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC104308.1-201ENST00000454621 333 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 RN7SL790P-201ENST00000474043 298 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 PPIAP19-201ENST00000486414 492 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC006483.1-201ENST00000487308 313 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 HMGB3P14-201ENST00000494195 599 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 PANCR-201ENST00000503456 493 ntTSL 5 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 TMEM248P1-201ENST00000510579 951 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AL161713.1-201ENST00000555538 145 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 MT1CP-201ENST00000567054 174 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC010547.7-201ENST00000570323 333 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 MIR1273E-201ENST00000581165 102 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 BNIP3P38-201ENST00000601117 544 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC005084.1-201ENST00000605160 304 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC091167.5-201ENST00000605689 894 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC010857.1-201ENST00000606398 594 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC103564.3-201ENST00000621194 220 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC073348.1-201ENST00000623002 331 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC073593.1-201ENST00000624500 411 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 AC073073.2-201ENST00000609827 2578 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 NR1H5P-201ENST00000452683 1377 ntBASIC2.36□□□□□ -2.03
LINC00643Q86TS7 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.36□□□□□ -2.03
LINC00643Q86TS7 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 RN7SKP250-201ENST00000363924 321 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 RNA5SP455-201ENST00000365190 119 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 RANP4-201ENST00000413361 655 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 RPS3P2-201ENST00000421346 701 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AP001324.1-201ENST00000428553 399 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 RPL23AP46-201ENST00000438548 490 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 HSPE1P28-201ENST00000443139 211 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 COX6CP2-201ENST00000444980 225 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 ARPC3P2-201ENST00000457786 533 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC146507.2-201ENST00000460608 476 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 RPSAP50-201ENST00000481955 852 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 MTND4LP2-201ENST00000502312 285 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 SNORA31.26-201ENST00000517250 137 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 ZFAND1-214ENST00000521287 772 ntTSL 3 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AP004242.1-201ENST00000533701 349 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 MIR4512-201ENST00000583257 77 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AL606490.9-201ENST00000603331 271 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 AL359742.1-201ENST00000622497 540 ntBASIC2.35□□□□□ -2.03
LINC00643Q86TS7 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
LINC00643Q86TS7 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC104966.1-201ENST00000467010 1464 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 U8.9-201ENST00000365667 134 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 RPL21P3-201ENST00000395517 478 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms