Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
PTCHD3Q3KNS1 AC022031.1-201ENST00000585985 2593 ntBASIC5.05□□□□□ -1.6
PTCHD3Q3KNS1 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
PTCHD3Q3KNS1 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
PTCHD3Q3KNS1 AL445523.1-201ENST00000451184 1362 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 ZNF542P-204ENST00000482727 1305 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RNU4-4P-201ENST00000364588 130 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 MIR217-201ENST00000384817 110 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 TAF9BP1-201ENST00000396646 746 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AL590084.2-201ENST00000401481 382 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RPL21P67-201ENST00000402896 478 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RNU2-6P-201ENST00000411404 190 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC019050.1-201ENST00000418508 492 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 EI24P4-201ENST00000423683 1078 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 Z93242.1-201ENST00000427102 353 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RPS27P18-201ENST00000431701 247 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RPL12P18-201ENST00000437175 325 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 GSTA7P-201ENST00000438425 448 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RPL12P3-201ENST00000440080 396 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC118469.1-201ENST00000442943 488 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 MTND2P4-201ENST00000445034 1004 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC097262.1-201ENST00000452559 548 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC073387.1-201ENST00000453261 709 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 SBDSP1-204ENST00000453858 737 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 Z92846.1-201ENST00000456203 268 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC009127.1-201ENST00000467090 155 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 BZW1P2-201ENST00000473537 826 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 RAP1BP2-201ENST00000478270 544 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 SNRPCP2-201ENST00000504370 475 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 GTF2F2P1-201ENST00000511083 675 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AP000859.1-201ENST00000525536 307 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 CASC16-202ENST00000563844 610 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC114947.2-201ENST00000565748 2125 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC006116.3-201ENST00000592968 361 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC024940.4-201ENST00000605507 246 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC009163.6-201ENST00000612367 342 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC090527.3-201ENST00000619041 548 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC135068.12-201ENST00000637370 931 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 DBF4P1-201ENST00000412976 1892 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 ELL2P3-201ENST00000457883 1602 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.04□□□□□ -1.6
PTCHD3Q3KNS1 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL603750.1-201ENST00000624216 1717 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 Z99496.1-201ENST00000469424 1477 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 OR56B2P-201ENST00000317102 954 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 Y_RNA.318-201ENST00000365131 97 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 U3.36-201ENST00000408418 213 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL121878.1-201ENST00000418638 859 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 ZNF885P-201ENST00000420174 1098 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 140.4 ms