Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NMNAT1P2-201ENST00000435192 860 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC104058.1-201ENST00000448028 297 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AP002884.2-201ENST00000471647 395 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC2.72□□□□□ -1.97
PRKDCP78527 AC011611.1-201ENST00000552179 197 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC012417.1-201ENST00000582307 1039 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.72□□□□□ -1.97
PRKDCP78527 AL163642.2-201ENST00000604722 1019 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC084036.1-201ENST00000609190 508 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AL354976.1-201ENST00000613843 387 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AL157762.1-201ENST00000619612 415 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC2.72□□□□□ -1.97
PRKDCP78527 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
PRKDCP78527 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.72□□□□□ -1.97
PRKDCP78527 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
PRKDCP78527 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
PRKDCP78527 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 RNA5SP187-201ENST00000384400 119 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 TAF9BP1-201ENST00000396646 746 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 MIR1261-201ENST00000408659 82 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.72□□□□□ -1.97
PRKDCP78527 BX119904.3-201ENST00000428194 957 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
PRKDCP78527 SNORA71B-202ENST00000439232 272 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC2.72□□□□□ -1.97
PRKDCP78527 AC093663.1-201ENST00000497190 394 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.72□□□□□ -1.97
PRKDCP78527 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC2.72□□□□□ -1.97
PRKDCP78527 MRPS21P9-201ENST00000571150 257 ntBASIC2.72□□□□□ -1.97
PRKDCP78527 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC2.72□□□□□ -1.97
PRKDCP78527 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC2.72□□□□□ -1.97
PRKDCP78527 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
PRKDCP78527 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
PRKDCP78527 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.97
PRKDCP78527 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.97
PRKDCP78527 MIR133A2-201ENST00000347538 102 ntBASIC2.71□□□□□ -1.97
PRKDCP78527 MIR1911-201ENST00000410783 80 ntBASIC2.71□□□□□ -1.97
PRKDCP78527 RNA5SP341-201ENST00000516261 117 ntBASIC2.71□□□□□ -1.97
PRKDCP78527 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.71□□□□□ -1.97
PRKDCP78527 AC090286.3-201ENST00000573133 187 ntBASIC2.71□□□□□ -1.97
PRKDCP78527 AC091905.2-201ENST00000623143 306 ntBASIC2.71□□□□□ -1.97
PRKDCP78527 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC2.71□□□□□ -1.98
PRKDCP78527 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
PRKDCP78527 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 AC116096.1-201ENST00000566804 2314 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 GDA-209ENST00000545168 5362 ntTSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 GNG5P1-201ENST00000255500 204 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 RPL21P11-201ENST00000461458 483 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC2.71□□□□□ -1.98
PRKDCP78527 RPL21P7-201ENST00000557463 483 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AC107993.1-201ENST00000591343 684 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AC023509.5-201ENST00000617434 807 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 BMS1P21-201ENST00000634565 365 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 ZNF826P-207ENST00000622273 1910 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 AL133268.1-201ENST00000405676 1401 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 SNORD35B-201ENST00000363660 87 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AC093698.1-201ENST00000423843 571 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC2.71□□□□□ -1.98
PRKDCP78527 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 AC069240.1-201ENST00000548774 375 ntBASIC2.71□□□□□ -1.98
PRKDCP78527 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC2.71□□□□□ -1.98
PRKDCP78527 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC2.71□□□□□ -1.98
PRKDCP78527 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
PRKDCP78527 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC2.71□□□□□ -1.98
PRKDCP78527 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC2.71□□□□□ -1.98
PRKDCP78527 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
PRKDCP78527 SNORD9-201ENST00000362566 104 ntBASIC2.7□□□□□ -1.98
PRKDCP78527 AL136131.1-201ENST00000406079 803 ntBASIC2.7□□□□□ -1.98
PRKDCP78527 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC2.7□□□□□ -1.98
PRKDCP78527 AC005476.1-201ENST00000554427 397 ntBASIC2.7□□□□□ -1.98
PRKDCP78527 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
PRKDCP78527 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PRKDCP78527 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC2.7□□□□□ -1.98
PRKDCP78527 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC2.7□□□□□ -1.98
PRKDCP78527 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PRKDCP78527 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PRKDCP78527 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
PRKDCP78527 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms