Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A4P53420 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.23□□□□□ -1.73
COL4A4P53420 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A4P53420 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A4P53420 DDX18P6-201ENST00000450119 1997 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 MTCO1P12-201ENST00000414273 1543 ntBASIC4.23□□□□□ -1.73
COL4A4P53420 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A4P53420 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
COL4A4P53420 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 RNVU1-14-201ENST00000384770 164 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
COL4A4P53420 PGBD4P8-201ENST00000412993 562 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.22□□□□□ -1.73
COL4A4P53420 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A4P53420 RPS17P13-201ENST00000448974 407 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.22□□□□□ -1.73
COL4A4P53420 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 NPM1P47-201ENST00000560843 856 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AC079171.1-201ENST00000568788 914 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AL031985.2-201ENST00000600955 480 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AL137246.1-201ENST00000607072 977 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AL450472.3-201ENST00000615578 367 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A4P53420 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 RNA5SP432-201ENST00000362480 116 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 Z97055.1-201ENST00000419730 712 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 OR6C71P-201ENST00000432580 913 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 CYCSP53-201ENST00000455540 265 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 BX510359.1-201ENST00000456973 237 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.22□□□□□ -1.73
COL4A4P53420 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A4P53420 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 AC006518.1-201ENST00000541449 943 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 CYCSP30-201ENST00000546447 172 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A4P53420 GTF2IP8-201ENST00000560687 584 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AC091167.4-201ENST00000605079 184 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A4P53420 MIR8058-201ENST00000615737 89 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AL596275.2-204ENST00000641628 552 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 AL596275.2-206ENST00000641957 626 ntBASIC4.22□□□□□ -1.73
COL4A4P53420 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A4P53420 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A4P53420 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL4A4P53420 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
COL4A4P53420 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
COL4A4P53420 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.21□□□□□ -1.73
COL4A4P53420 AC006484.1-201ENST00000435086 1884 ntBASIC4.21□□□□□ -1.73
COL4A4P53420 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A4P53420 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A4P53420 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A4P53420 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
COL4A4P53420 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A4P53420 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A4P53420 RNA5SP51-201ENST00000364750 119 ntBASIC4.21□□□□□ -1.74
COL4A4P53420 AL591503.2-201ENST00000442314 1005 ntBASIC4.21□□□□□ -1.74
COL4A4P53420 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A4P53420 RPL21P6-201ENST00000479171 504 ntBASIC4.21□□□□□ -1.74
COL4A4P53420 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.21□□□□□ -1.74
COL4A4P53420 KATNBL1P4-201ENST00000503545 918 ntBASIC4.21□□□□□ -1.74
COL4A4P53420 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A4P53420 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A4P53420 AC095038.2-201ENST00000621464 1070 ntBASIC4.21□□□□□ -1.74
COL4A4P53420 OR6C71P-202ENST00000641886 1107 ntBASIC4.21□□□□□ -1.74
COL4A4P53420 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A4P53420 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
COL4A4P53420 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
COL4A4P53420 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.21□□□□□ -1.74
COL4A4P53420 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.2□□□□□ -1.74
COL4A4P53420 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A4P53420 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.2□□□□□ -1.74
COL4A4P53420 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
COL4A4P53420 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A4P53420 RNA5SP306-201ENST00000411087 107 ntBASIC4.2□□□□□ -1.74
COL4A4P53420 RPS29P4-201ENST00000414733 161 ntBASIC4.2□□□□□ -1.74
COL4A4P53420 FABP3P2-201ENST00000453169 399 ntBASIC4.2□□□□□ -1.74
COL4A4P53420 RPL6P9-201ENST00000466502 859 ntBASIC4.2□□□□□ -1.74
COL4A4P53420 NPM1P29-201ENST00000483112 803 ntBASIC4.2□□□□□ -1.74
COL4A4P53420 AC106707.2-201ENST00000484182 374 ntBASIC4.2□□□□□ -1.74
COL4A4P53420 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.2□□□□□ -1.74
COL4A4P53420 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 AL137843.1-201ENST00000605078 385 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms