Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CYCSP28-201ENST00000534284 321 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SCN4AP35499 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.75□□□□□ -1.65
SCN4AP35499 AL390334.1-201ENST00000556395 450 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.75□□□□□ -1.65
SCN4AP35499 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SCN4AP35499 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.75□□□□□ -1.65
SCN4AP35499 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SCN4AP35499 GVINP1-202ENST00000531871 7271 ntBASIC4.75□□□□□ -1.65
SCN4AP35499 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SCN4AP35499 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC4.74□□□□□ -1.65
SCN4AP35499 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SCN4AP35499 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.74□□□□□ -1.65
SCN4AP35499 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.74□□□□□ -1.65
SCN4AP35499 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.74□□□□□ -1.65
SCN4AP35499 SLC25A36P1-201ENST00000590111 465 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 MIMT1-201ENST00000597105 1050 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 QTRT1P1-201ENST00000604344 1078 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.74□□□□□ -1.65
SCN4AP35499 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.74□□□□□ -1.65
SCN4AP35499 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SCN4AP35499 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SCN4AP35499 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SCN4AP35499 Y_RNA.500-201ENST00000384466 111 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.74□□□□□ -1.65
SCN4AP35499 RPL21P23-201ENST00000446654 460 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 AL133162.1-201ENST00000463228 453 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.74□□□□□ -1.65
SCN4AP35499 AC017015.1-201ENST00000477387 286 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 AC005726.1-201ENST00000494679 427 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.74□□□□□ -1.65
SCN4AP35499 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.74□□□□□ -1.65
SCN4AP35499 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.74□□□□□ -1.65
SCN4AP35499 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.74□□□□□ -1.65
SCN4AP35499 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.74□□□□□ -1.65
SCN4AP35499 AL355365.1-201ENST00000616480 294 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SCN4AP35499 AC008079.2-201ENST00000623543 20396 ntBASIC4.74□□□□□ -1.65
SCN4AP35499 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SCN4AP35499 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.73□□□□□ -1.65
SCN4AP35499 AC020633.1-201ENST00000468439 2247 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SCN4AP35499 IL6STP1-201ENST00000346911 1020 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SCN4AP35499 SNORD3H-201ENST00000384486 214 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 RN7SKP199-201ENST00000410325 305 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 AL161631.1-201ENST00000417933 486 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 RPL6P21-201ENST00000418672 846 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.73□□□□□ -1.65
SCN4AP35499 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.73□□□□□ -1.65
SCN4AP35499 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 UBE2DNL-203ENST00000474922 222 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 AC090013.1-201ENST00000485147 480 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.73□□□□□ -1.65
SCN4AP35499 OR5B10P-201ENST00000532869 642 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.73□□□□□ -1.65
SCN4AP35499 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.73□□□□□ -1.65
SCN4AP35499 AC020914.6-201ENST00000594327 272 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.73□□□□□ -1.65
SCN4AP35499 SNX6P1-201ENST00000601728 1224 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 AC026979.4-201ENST00000606555 645 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 AL353726.1-201ENST00000614041 1000 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.73□□□□□ -1.65
SCN4AP35499 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.73□□□□□ -1.65
SCN4AP35499 AC244258.1-201ENST00000637553 1071 ntBASIC4.73□□□□□ -1.65
SCN4AP35499 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SCN4AP35499 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
SCN4AP35499 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SCN4AP35499 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SCN4AP35499 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SCN4AP35499 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SCN4AP35499 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SCN4AP35499 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SCN4AP35499 SEPT7P8-201ENST00000413308 775 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.72□□□□□ -1.65
SCN4AP35499 MTND2P15-201ENST00000418575 892 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 AC083863.1-201ENST00000438811 231 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 CYCSP35-201ENST00000451978 304 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.72□□□□□ -1.65
SCN4AP35499 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.72□□□□□ -1.65
SCN4AP35499 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.72□□□□□ -1.65
SCN4AP35499 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.72□□□□□ -1.65
SCN4AP35499 AC027176.2-201ENST00000559166 746 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 NPM1P47-201ENST00000560843 856 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 AC244505.7-201ENST00000599675 272 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 RNU1-30P-201ENST00000606575 163 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 MIR7154-201ENST00000620673 73 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 AC005086.4-201ENST00000623065 213 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 AP005264.7-201ENST00000625003 745 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 AC099654.11-201ENST00000638857 294 ntBASIC4.72□□□□□ -1.65
SCN4AP35499 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.72□□□□□ -1.65
SCN4AP35499 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
SCN4AP35499 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SCN4AP35499 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SCN4AP35499 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC4.72□□□□□ -1.65
SCN4AP35499 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SCN4AP35499 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.72□□□□□ -1.65
SCN4AP35499 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SCN4AP35499 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms