Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 SNORA70.4-201ENST00000365509 134 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
HOXC9P31274 MIR195-201ENST00000385194 87 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXC9P31274 AL445213.1-201ENST00000412589 747 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 MTND4P24-201ENST00000424002 397 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXC9P31274 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 RPL36AP13-201ENST00000457490 317 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 NPM1P28-201ENST00000492269 840 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 TRMT10BP1-201ENST00000519377 943 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXC9P31274 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXC9P31274 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXC9P31274 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXC9P31274 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXC9P31274 AC005255.1-201ENST00000593748 216 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXC9P31274 MKKS-203ENST00000609375 882 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXC9P31274 CR589904.2-201ENST00000612533 440 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 AL133370.2-201ENST00000619934 439 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 AC022106.2-201ENST00000620114 757 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 FP236240.3-201ENST00000623061 327 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXC9P31274 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 AL161912.2-201ENST00000565707 3007 ntBASIC5.43□□□□□ -1.54
HOXC9P31274 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXC9P31274 CDC27P2-201ENST00000425026 1922 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXC9P31274 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXC9P31274 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXC9P31274 MIR208A-201ENST00000362287 71 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 RNU6-1251P-201ENST00000364502 107 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 SNORA73.2-201ENST00000364946 201 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 RAB9AP3-201ENST00000412737 573 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 AC234781.4-201ENST00000419384 244 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXC9P31274 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXC9P31274 AL157884.3-201ENST00000448273 1184 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 RAB9AP1-201ENST00000449393 573 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 CCRL1P1-201ENST00000449542 1053 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXC9P31274 OR9M1P-201ENST00000459641 921 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 AC091544.1-201ENST00000484702 348 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXC9P31274 MTCO1P31-201ENST00000506355 492 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXC9P31274 HMGB1P46-201ENST00000520062 610 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXC9P31274 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXC9P31274 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXC9P31274 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXC9P31274 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXC9P31274 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXC9P31274 BNIP3P19-201ENST00000605397 577 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 AC084824.5-201ENST00000612009 413 ntBASIC5.42□□□□□ -1.54
HOXC9P31274 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXC9P31274 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXC9P31274 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXC9P31274 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXC9P31274 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXC9P31274 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXC9P31274 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXC9P31274 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXC9P31274 SNORD115-48-201ENST00000364764 76 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 SNORD51.1-201ENST00000365405 77 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 OR13C3-201ENST00000374781 1108 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 MIR1271-201ENST00000408537 86 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXC9P31274 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXC9P31274 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXC9P31274 AC007563.3-201ENST00000433233 371 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXC9P31274 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXC9P31274 RPL7L1P8-201ENST00000469911 741 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 AC108729.2-201ENST00000476543 840 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXC9P31274 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXC9P31274 RNU7-143P-201ENST00000516781 65 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 MTND1P6-201ENST00000523621 946 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 YPEL5P3-201ENST00000547227 352 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 CR383656.14-201ENST00000551951 406 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 AC025627.2-201ENST00000576220 160 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 AC024220.1-201ENST00000603675 484 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 AC064801.1-201ENST00000612025 407 ntBASIC5.41□□□□□ -1.54
HOXC9P31274 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXC9P31274 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXC9P31274 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXC9P31274 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXC9P31274 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms