Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trav6d-4Q5R1I0 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Trav6d-4Q5R1I0 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trav6d-4Q5R1I0 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trav6d-4Q5R1I0 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Gm43294-201ENSMUST00000202850 2490 ntBASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Zkscan4-202ENSMUST00000225845 1506 ntBASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trav6d-4Q5R1I0 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Gm16401-202ENSMUST00000197463 2074 ntBASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Trav6d-4Q5R1I0 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Otx2os1-206ENSMUST00000228153 787 ntBASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trav6d-4Q5R1I0 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Gm9103-201ENSMUST00000119371 405 ntBASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Gm17807-201ENSMUST00000186869 298 ntBASIC13.9□□□□□ -0.18
Trav6d-4Q5R1I0 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC13.9□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms