Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A5P29400 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A5P29400 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
COL4A5P29400 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A5P29400 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.37■■□□□ 1.33
COL4A5P29400 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC23.37■■□□□ 1.33
COL4A5P29400 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A5P29400 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC23.37■■□□□ 1.33
COL4A5P29400 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
COL4A5P29400 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
COL4A5P29400 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC23.37■■□□□ 1.33
COL4A5P29400 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A5P29400 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.37■■□□□ 1.33
COL4A5P29400 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A5P29400 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC23.37■■□□□ 1.33
COL4A5P29400 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
COL4A5P29400 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A5P29400 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A5P29400 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.36■■□□□ 1.33
COL4A5P29400 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A5P29400 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC23.36■■□□□ 1.33
COL4A5P29400 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC23.36■■□□□ 1.33
COL4A5P29400 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A5P29400 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A5P29400 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A5P29400 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A5P29400 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A5P29400 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A5P29400 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC23.35■■□□□ 1.33
COL4A5P29400 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC23.35■■□□□ 1.33
COL4A5P29400 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
COL4A5P29400 MIR3652-201ENST00000579335 131 ntBASIC23.35■■□□□ 1.33
COL4A5P29400 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A5P29400 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
COL4A5P29400 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A5P29400 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A5P29400 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A5P29400 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A5P29400 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A5P29400 PPIH-202ENST00000372549 327 ntTSL 3 BASIC23.35■■□□□ 1.33
COL4A5P29400 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A5P29400 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A5P29400 AL845331.1-201ENST00000424978 1190 ntBASIC23.35■■□□□ 1.33
COL4A5P29400 KRT17P6-201ENST00000453795 1220 ntBASIC23.35■■□□□ 1.33
COL4A5P29400 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC23.35■■□□□ 1.33
COL4A5P29400 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.35■■□□□ 1.33
COL4A5P29400 AC111152.3-201ENST00000569699 673 ntBASIC23.35■■□□□ 1.33
COL4A5P29400 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.35■■□□□ 1.33
COL4A5P29400 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC23.35■■□□□ 1.33
COL4A5P29400 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.35■■□□□ 1.33
COL4A5P29400 WDR6-223ENST00000627177 207 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A5P29400 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A5P29400 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A5P29400 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A5P29400 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
COL4A5P29400 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
COL4A5P29400 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A5P29400 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.34■■□□□ 1.33
COL4A5P29400 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC23.34■■□□□ 1.33
COL4A5P29400 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A5P29400 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A5P29400 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
COL4A5P29400 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A5P29400 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A5P29400 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.34■■□□□ 1.33
COL4A5P29400 AC016734.2-201ENST00000624325 1377 ntBASIC23.33■■□□□ 1.33
COL4A5P29400 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A5P29400 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A5P29400 AC026310.3-201ENST00000625186 2373 ntBASIC23.33■■□□□ 1.33
COL4A5P29400 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A5P29400 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A5P29400 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
COL4A5P29400 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A5P29400 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A5P29400 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A5P29400 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A5P29400 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A5P29400 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A5P29400 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A5P29400 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A5P29400 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A5P29400 RASA4DP-201ENST00000460726 1199 ntBASIC23.33■■□□□ 1.33
COL4A5P29400 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC23.33■■□□□ 1.33
COL4A5P29400 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC23.33■■□□□ 1.33
COL4A5P29400 IFNL4P1-201ENST00000607083 540 ntBASIC23.33■■□□□ 1.33
COL4A5P29400 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A5P29400 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A5P29400 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL4A5P29400 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.32
COL4A5P29400 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.32
COL4A5P29400 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.32
COL4A5P29400 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC23.32■■□□□ 1.32
COL4A5P29400 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A5P29400 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
COL4A5P29400 AC023511.2-201ENST00000618803 211 ntBASIC23.32■■□□□ 1.32
COL4A5P29400 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC23.32■■□□□ 1.32
COL4A5P29400 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A5P29400 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A5P29400 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.32■■□□□ 1.32
COL4A5P29400 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms