Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC13.42□□□□□ -0.26
Cdx1P18111 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cdx1P18111 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.41□□□□□ -0.26
Cdx1P18111 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC13.41□□□□□ -0.26
Cdx1P18111 Gm6576-201ENSMUST00000169678 883 ntBASIC13.41□□□□□ -0.26
Cdx1P18111 Gm26971-201ENSMUST00000182423 1072 ntBASIC13.41□□□□□ -0.26
Cdx1P18111 Mir6982-201ENSMUST00000184354 68 ntBASIC13.41□□□□□ -0.26
Cdx1P18111 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC13.41□□□□□ -0.26
Cdx1P18111 Gm44549-201ENSMUST00000208351 577 ntBASIC13.41□□□□□ -0.26
Cdx1P18111 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13.41□□□□□ -0.26
Cdx1P18111 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
Cdx1P18111 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Cdx1P18111 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC13.4□□□□□ -0.26
Cdx1P18111 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Gm18666-201ENSMUST00000190039 958 ntBASIC13.4□□□□□ -0.26
Cdx1P18111 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Cdx1P18111 Arhgef33-211ENSMUST00000225658 473 ntBASIC13.4□□□□□ -0.26
Cdx1P18111 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Cdx1P18111 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Cdx1P18111 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx1P18111 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC13.4□□□□□ -0.27
Cdx1P18111 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Cdx1P18111 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Cdx1P18111 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdx1P18111 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Cdx1P18111 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC13.39□□□□□ -0.27
Cdx1P18111 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC13.39□□□□□ -0.27
Cdx1P18111 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC13.39□□□□□ -0.27
Cdx1P18111 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdx1P18111 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdx1P18111 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx1P18111 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx1P18111 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Cdx1P18111 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx1P18111 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx1P18111 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx1P18111 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms