Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.33□□□□□ -1.72
LHX3Q9UBR4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
LHX3Q9UBR4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.33□□□□□ -1.72
LHX3Q9UBR4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LHX3Q9UBR4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
LHX3Q9UBR4 DDX18P4-201ENST00000511690 1966 ntBASIC4.33□□□□□ -1.72
LHX3Q9UBR4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC092435.4-201ENST00000623012 4159 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC009951.1-201ENST00000623674 2614 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 BTBD10P1-201ENST00000549824 1352 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 MIR383-201ENST00000362257 73 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 MIR92A2-201ENST00000385299 75 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 RNU6-603P-201ENST00000411403 107 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC010385.1-201ENST00000412374 256 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 ARL2BPP3-201ENST00000421226 480 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 NIPA2P1-201ENST00000426223 976 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 SKP1P3-201ENST00000429280 487 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 BTF3P10-201ENST00000433415 495 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC105137.1-201ENST00000484355 562 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 PARP4P3-201ENST00000510265 317 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC138701.1-201ENST00000524329 714 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AP003730.1-201ENST00000524605 285 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 TVP23BP1-201ENST00000557500 617 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 IPO5P1-202ENST00000600039 287 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AL590392.1-201ENST00000604960 446 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC055764.2-201ENST00000610089 670 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 MIR6716-201ENST00000613413 80 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC139769.3-201ENST00000618383 175 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AC015908.5-201ENST00000623289 343 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 AL445437.1-201ENST00000623157 3087 ntBASIC4.32□□□□□ -1.72
LHX3Q9UBR4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LHX3Q9UBR4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 LARP1BP1-201ENST00000506036 1359 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC096656.1-201ENST00000623826 1364 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC009229.4-201ENST00000623854 1947 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC067945.1-201ENST00000342609 618 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 RNA5SP28-201ENST00000363841 119 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 SNORA62.2-201ENST00000364672 152 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AL049693.1-201ENST00000402760 611 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 RAB28P1-201ENST00000411517 641 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 OR6C64P-201ENST00000419708 825 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 NUTF2P3-201ENST00000448540 384 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC005008.1-201ENST00000456151 612 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 RPS20P4-201ENST00000461659 355 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC108729.2-201ENST00000476543 840 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC108145.1-201ENST00000503770 153 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC008694.2-201ENST00000517591 306 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms