Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL121834.1-201ENST00000572284 509 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 FAM25E-202ENST00000608562 189 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC245389.2-201ENST00000616023 576 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC243756.2-201ENST00000618406 463 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC242843.1-201ENST00000618702 573 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC006065.6-201ENST00000625201 545 ntBASIC4.44□□□□□ -1.7
VPS39Q96JC1 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS39Q96JC1 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS39Q96JC1 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS39Q96JC1 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC105074.1-201ENST00000623380 3095 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC022031.1-201ENST00000585985 2593 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS39Q96JC1 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS39Q96JC1 RNA5SP28-201ENST00000363841 119 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 RNA5SP397-201ENST00000391323 118 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 HNRNPDP2-201ENST00000406475 478 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AP001324.1-201ENST00000428553 399 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AL772161.1-201ENST00000439130 476 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AL353093.1-201ENST00000441292 436 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 FGF7P3-201ENST00000454645 303 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS39Q96JC1 PPM1AP1-201ENST00000502740 1135 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 MTCO1P31-201ENST00000506355 492 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC110792.2-201ENST00000510278 224 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC015795.1-201ENST00000513669 327 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC012414.2-201ENST00000559474 187 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 RPL26P30-202ENST00000602923 645 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AL139286.1-201ENST00000604465 483 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC004825.2-201ENST00000616634 455 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AL669942.2-201ENST00000620352 697 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 AC104820.1-201ENST00000624183 307 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS39Q96JC1 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 AL356489.2-201ENST00000566968 3528 ntBASIC4.43□□□□□ -1.7
VPS39Q96JC1 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS39Q96JC1 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS39Q96JC1 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
VPS39Q96JC1 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS39Q96JC1 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS39Q96JC1 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS39Q96JC1 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS39Q96JC1 OR5T3-201ENST00000303059 1023 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 MTND3P20-201ENST00000407663 186 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AL049737.1-201ENST00000413920 1403 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 EIF4EP1-201ENST00000422311 642 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC006466.1-201ENST00000438721 289 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 SNORD108-201ENST00000459332 71 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 RPS27AP17-201ENST00000463344 455 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 RPL12P20-201ENST00000475538 479 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC231760.1-201ENST00000498002 260 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 PPBPP1-201ENST00000510807 373 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC018797.3-201ENST00000513388 1241 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 PTP4A1P6-201ENST00000531034 478 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 GLRXP2-201ENST00000555594 321 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms