Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC107982.3-201ENST00000584957 985 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC006042.3-201ENST00000454684 1469 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 THAP12P8-201ENST00000447914 2115 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 PGBD4P8-201ENST00000412993 562 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL160175.1-201ENST00000428124 247 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 ARL4AP1-201ENST00000503220 705 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 IFITM8P-201ENST00000522529 394 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 SNORA3.3-201ENST00000408712 125 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 EIF4A1P3-201ENST00000411521 244 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL160275.2-201ENST00000412010 394 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL590806.1-201ENST00000415818 853 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL512326.1-201ENST00000443050 721 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 MRPL35P4-201ENST00000453682 566 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL445433.1-201ENST00000457507 257 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RPS7P7-201ENST00000463499 571 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL591473.1-201ENST00000464297 313 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 PHBP17-201ENST00000528576 541 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 MIR5684-201ENST00000585074 65 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL451086.1-201ENST00000605596 223 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AP000648.2-201ENST00000624182 404 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 BTBD10P1-201ENST00000549824 1352 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 OR4A15-201ENST00000314706 1035 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RNA5SP124-201ENST00000362739 110 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RNU4-6P-201ENST00000410804 122 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RPS4XP15-201ENST00000489210 795 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RNU1-95P-201ENST00000516357 160 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RNU1-128P-201ENST00000516704 160 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 CR392039.5-201ENST00000623201 510 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL359757.2-201ENST00000624309 274 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 RN7SKP167-201ENST00000411047 285 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC011998.1-201ENST00000433403 117 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC090136.1-201ENST00000520009 240 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL034408.1-202ENST00000636088 415 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 U8.11-201ENST00000384699 133 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 U8.12-201ENST00000384701 133 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 MIR34B-201ENST00000385076 84 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
SYNE1Q8NF91 HIST1H2APS3-201ENST00000403259 134 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 MIR1271-201ENST00000408537 86 ntBASIC1.25□□□□□ -2.21
SYNE1Q8NF91 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms