Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 AC108751.5-201ENST00000492880 1336 ntBASIC4.85□□□□□ -1.63
PRPF39Q86UA1 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PRPF39Q86UA1 AL445487.1-201ENST00000415694 1580 ntBASIC4.85□□□□□ -1.63
PRPF39Q86UA1 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PRPF39Q86UA1 AL359922.3-201ENST00000624779 1670 ntBASIC4.85□□□□□ -1.63
PRPF39Q86UA1 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.85□□□□□ -1.63
PRPF39Q86UA1 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.85□□□□□ -1.63
PRPF39Q86UA1 AL049555.1-201ENST00000562834 1933 ntBASIC4.85□□□□□ -1.63
PRPF39Q86UA1 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PRPF39Q86UA1 CASC19-204ENST00000641001 2055 ntBASIC4.85□□□□□ -1.63
PRPF39Q86UA1 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
PRPF39Q86UA1 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC092435.4-201ENST00000623012 4159 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 GCNT6-201ENST00000379591 934 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 RNU2-65P-201ENST00000410162 185 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC114814.2-201ENST00000419195 485 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 RPL7P57-201ENST00000423238 740 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 TMX2P1-201ENST00000436507 708 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 UBE2V1P5-201ENST00000440070 405 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AL158053.1-201ENST00000441503 453 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 DNAJC19P8-201ENST00000452887 259 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AL049829.1-201ENST00000465411 156 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 RN7SL354P-201ENST00000469282 294 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 FTH1P24-201ENST00000503502 462 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 SCARNA22-201ENST00000503991 125 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC098799.3-201ENST00000506095 438 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC091868.1-201ENST00000508746 304 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 HMGN1P15-201ENST00000513870 295 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 SNORD116-26-201ENST00000516006 96 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 AC019193.2-201ENST00000610012 634 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PRPF39Q86UA1 MAPK10-320ENST00000641462 6696 ntBASIC4.84□□□□□ -1.63
PRPF39Q86UA1 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
PRPF39Q86UA1 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.84□□□□□ -1.64
PRPF39Q86UA1 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
PRPF39Q86UA1 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
PRPF39Q86UA1 AC046144.1-201ENST00000478559 1853 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AL136520.1-201ENST00000600311 1322 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 HNRNPDP2-201ENST00000406475 478 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 OR51B3P-201ENST00000412287 913 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 MTND2P15-201ENST00000418575 892 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC009480.2-201ENST00000422916 432 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 OR5AW1P-201ENST00000426334 1006 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 RPS26P40-201ENST00000435209 294 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC016831.4-201ENST00000438302 307 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 RPL36AP15-201ENST00000444514 266 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC096992.1-201ENST00000459808 709 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC092905.1-201ENST00000467527 949 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 NDUFA5P9-201ENST00000472609 340 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC104971.1-201ENST00000495117 578 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 RPS4XP18-201ENST00000495480 763 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 RNU5A-7P-201ENST00000515979 116 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 RN7SKP92-201ENST00000517266 244 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.83□□□□□ -1.64
PRPF39Q86UA1 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.83□□□□□ -1.64
PRPF39Q86UA1 AL353600.1-201ENST00000608148 251 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms