Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC011626.1-201ENST00000604710 562 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC013468.1-201ENST00000608680 598 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC009313.2-201ENST00000417893 1941 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AL133268.1-201ENST00000405676 1401 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC017104.4-201ENST00000636283 1592 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 RNA5SP447-201ENST00000363749 119 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 RNU1-74P-201ENST00000384108 171 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 OR8V1P-201ENST00000395193 873 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC246680.2-201ENST00000422106 389 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 MTCO2P17-201ENST00000424336 677 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AL161722.2-201ENST00000434731 981 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 RPL7P11-201ENST00000437586 658 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 MRPL35P2-201ENST00000448009 511 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AP000942.1-201ENST00000463969 747 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AL591473.1-201ENST00000464297 313 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC091167.1-201ENST00000492017 396 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 MTCO1P35-201ENST00000515270 228 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 RN7SKP276-201ENST00000516242 268 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AP000889.1-201ENST00000530968 660 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AP001880.2-201ENST00000538233 448 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 MIR3939-201ENST00000582614 106 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC008814.1-201ENST00000603797 406 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC024060.1-201ENST00000607052 494 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 MIR6839-201ENST00000620425 113 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC068787.1-201ENST00000623908 691 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AC015726.3-201ENST00000624501 418 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 OR8B1P-202ENST00000641132 1178 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 AL672167.1-204ENST00000641875 3017 ntBASIC4.78□□□□□ -1.64
COL28A1Q2UY09 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL28A1Q2UY09 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 RNA5SP90-201ENST00000364801 99 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 ELOCP19-201ENST00000411919 318 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 PCNPP4-201ENST00000414817 517 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC104333.2-201ENST00000422630 192 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC092634.2-201ENST00000428146 1010 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 RPL23AP1-201ENST00000428990 471 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AL031663.1-201ENST00000437445 219 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 RPS29P10-201ENST00000439197 166 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 TXNP5-201ENST00000441043 315 ntBASIC4.77□□□□□ -1.65
COL28A1Q2UY09 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms