Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 AC011497.2-201ENST00000600255 639 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC007363.1-201ENST00000604736 620 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC087045.1-201ENST00000605856 382 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AC007497.1-201ENST00000610421 561 ntBASIC5.76□□□□□ -1.49
RNF4P78317 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.76□□□□□ -1.49
RNF4P78317 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 AC010338.1-201ENST00000621823 717 ntBASIC5.76□□□□□ -1.49
RNF4P78317 AL732618.1-201ENST00000623251 301 ntBASIC5.76□□□□□ -1.49
RNF4P78317 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 MIR3662-201ENST00000637030 95 ntBASIC5.76□□□□□ -1.49
RNF4P78317 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 AC110373.1-201ENST00000505994 3505 ntBASIC5.76□□□□□ -1.49
RNF4P78317 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
RNF4P78317 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RNF4P78317 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 AC009779.8-201ENST00000641684 4384 ntBASIC5.76□□□□□ -1.49
RNF4P78317 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
RNF4P78317 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.75□□□□□ -1.49
RNF4P78317 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 NLRP3P1-201ENST00000622303 1785 ntBASIC5.75□□□□□ -1.49
RNF4P78317 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
RNF4P78317 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
RNF4P78317 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
RNF4P78317 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 XGY1-201ENST00000381172 446 ntBASIC5.75□□□□□ -1.49
RNF4P78317 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
RNF4P78317 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.75□□□□□ -1.49
RNF4P78317 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC5.75□□□□□ -1.49
RNF4P78317 AL445669.1-201ENST00000426743 755 ntBASIC5.75□□□□□ -1.49
RNF4P78317 RPL31P35-201ENST00000431058 377 ntBASIC5.75□□□□□ -1.49
RNF4P78317 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.75□□□□□ -1.49
RNF4P78317 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.75□□□□□ -1.49
RNF4P78317 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.75□□□□□ -1.49
RNF4P78317 RPL23AP16-201ENST00000441715 421 ntBASIC5.75□□□□□ -1.49
RNF4P78317 GAPDHP23-201ENST00000444823 993 ntBASIC5.75□□□□□ -1.49
RNF4P78317 C1DP4-201ENST00000455429 424 ntBASIC5.75□□□□□ -1.49
RNF4P78317 RNU7-136P-201ENST00000458819 69 ntBASIC5.75□□□□□ -1.49
RNF4P78317 AC090142.1-201ENST00000465776 462 ntBASIC5.75□□□□□ -1.49
RNF4P78317 RBM43P1-201ENST00000476891 1081 ntBASIC5.75□□□□□ -1.49
RNF4P78317 MTCO2P30-201ENST00000503662 364 ntBASIC5.75□□□□□ -1.49
RNF4P78317 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.75□□□□□ -1.49
RNF4P78317 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.75□□□□□ -1.49
RNF4P78317 IGKV2-19-201ENST00000518132 283 ntBASIC5.75□□□□□ -1.49
RNF4P78317 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.75□□□□□ -1.49
RNF4P78317 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.75□□□□□ -1.49
RNF4P78317 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.75□□□□□ -1.49
RNF4P78317 NANOGNBP2-201ENST00000544753 553 ntBASIC5.75□□□□□ -1.49
RNF4P78317 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 AC025678.1-201ENST00000567861 338 ntBASIC5.75□□□□□ -1.49
RNF4P78317 AC002310.3-201ENST00000569728 723 ntBASIC5.75□□□□□ -1.49
RNF4P78317 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 MIR4301-201ENST00000577203 66 ntBASIC5.75□□□□□ -1.49
RNF4P78317 MIR3189-201ENST00000578735 73 ntBASIC5.75□□□□□ -1.49
RNF4P78317 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.75□□□□□ -1.49
RNF4P78317 GLYATL1P2-202ENST00000588046 902 ntBASIC5.75□□□□□ -1.49
RNF4P78317 TPMTP1-201ENST00000592307 737 ntBASIC5.75□□□□□ -1.49
RNF4P78317 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.75□□□□□ -1.49
RNF4P78317 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.75□□□□□ -1.49
RNF4P78317 MIR1321-201ENST00000637766 79 ntBASIC5.75□□□□□ -1.49
RNF4P78317 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 AP001541.1-201ENST00000623322 1904 ntBASIC5.75□□□□□ -1.49
RNF4P78317 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.75□□□□□ -1.49
RNF4P78317 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.75□□□□□ -1.49
RNF4P78317 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
RNF4P78317 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RNF4P78317 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
RNF4P78317 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms