Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NFU1P2-201ENST00000448700 469 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC013267.1-201ENST00000458227 267 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC091544.1-201ENST00000484702 348 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 EEF1A1P25-201ENST00000495704 1267 ntBASIC6.26□□□□□ -1.41
LIG3P49916 POU5F1P7-201ENST00000508759 541 ntBASIC6.26□□□□□ -1.41
LIG3P49916 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC6.26□□□□□ -1.41
LIG3P49916 AC093809.1-201ENST00000509155 340 ntBASIC6.26□□□□□ -1.41
LIG3P49916 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 AC117522.1-201ENST00000509821 380 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.26□□□□□ -1.41
LIG3P49916 AC006499.2-201ENST00000513470 337 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC114781.4-201ENST00000513707 639 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG3P49916 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG3P49916 AC022878.1-201ENST00000530684 149 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC013828.2-201ENST00000532487 235 ntBASIC6.26□□□□□ -1.41
LIG3P49916 NANOGNBP2-201ENST00000544753 553 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG3P49916 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.26□□□□□ -1.41
LIG3P49916 AC018809.2-201ENST00000602436 3823 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.26□□□□□ -1.41
LIG3P49916 AC104966.1-201ENST00000467010 1464 ntBASIC6.26□□□□□ -1.41
LIG3P49916 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.26□□□□□ -1.41
LIG3P49916 AL034370.1-201ENST00000397254 1590 ntBASIC6.26□□□□□ -1.41
LIG3P49916 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
LIG3P49916 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 AC010266.2-201ENST00000564741 3255 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 AC140479.2-201ENST00000421567 3130 ntBASIC6.25□□□□□ -1.41
LIG3P49916 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 GAPDHP24-201ENST00000328713 983 ntBASIC6.25□□□□□ -1.41
LIG3P49916 Y_RNA.372-201ENST00000365599 102 ntBASIC6.25□□□□□ -1.41
LIG3P49916 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
LIG3P49916 Y_RNA.453-201ENST00000384223 109 ntBASIC6.25□□□□□ -1.41
LIG3P49916 RNA5SP187-201ENST00000384400 119 ntBASIC6.25□□□□□ -1.41
LIG3P49916 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
LIG3P49916 AL590002.1-201ENST00000406554 418 ntBASIC6.25□□□□□ -1.41
LIG3P49916 ERMN-204ENST00000409925 556 ntTSL 4 BASIC6.25□□□□□ -1.41
LIG3P49916 RNU2-65P-201ENST00000410162 185 ntBASIC6.25□□□□□ -1.41
LIG3P49916 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 C1DP2-201ENST00000418167 426 ntBASIC6.25□□□□□ -1.41
LIG3P49916 TRIM60P10Y-201ENST00000425589 751 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 RPS27AP6-201ENST00000427962 448 ntBASIC6.25□□□□□ -1.41
LIG3P49916 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 TRIM60P8Y-201ENST00000436338 762 ntBASIC6.25□□□□□ -1.41
LIG3P49916 PPIAP10-201ENST00000438675 458 ntBASIC6.25□□□□□ -1.41
LIG3P49916 OR7E125P-201ENST00000443450 846 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 ELOCP23-201ENST00000452014 332 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AL133244.1-201ENST00000456007 258 ntBASIC6.25□□□□□ -1.41
LIG3P49916 RANP2-201ENST00000456833 229 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AP002884.1-201ENST00000479691 655 ntBASIC6.25□□□□□ -1.41
LIG3P49916 UBA52P3-201ENST00000491303 382 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
LIG3P49916 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 KCTD9P2-201ENST00000512203 1013 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC6.25□□□□□ -1.41
LIG3P49916 IGLVVI-25-1-201ENST00000521893 249 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 MIR4701-201ENST00000583094 63 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.25□□□□□ -1.41
LIG3P49916 AP001823.1-201ENST00000604056 1003 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AL353621.2-201ENST00000605340 133 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AC091965.4-201ENST00000607691 587 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 AC006924.1-201ENST00000610750 559 ntBASIC6.25□□□□□ -1.41
LIG3P49916 MIR6071-201ENST00000616741 78 ntBASIC6.25□□□□□ -1.41
LIG3P49916 AC005618.4-201ENST00000625053 554 ntBASIC6.25□□□□□ -1.41
LIG3P49916 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.25□□□□□ -1.41
LIG3P49916 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.25□□□□□ -1.41
LIG3P49916 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIG3P49916 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms