Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
BRCA1P38398 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.78□□□□□ -1.64
BRCA1P38398 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 AC006971.1-201ENST00000407916 4486 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.78□□□□□ -1.64
BRCA1P38398 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.78□□□□□ -1.64
BRCA1P38398 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.78□□□□□ -1.64
BRCA1P38398 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
BRCA1P38398 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.78□□□□□ -1.64
BRCA1P38398 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.78□□□□□ -1.64
BRCA1P38398 AL390879.2-203ENST00000426943 1121 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 HMGN1P11-201ENST00000508668 303 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.78□□□□□ -1.64
BRCA1P38398 AC090151.1-201ENST00000520784 730 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.78□□□□□ -1.64
BRCA1P38398 AL583832.1-201ENST00000603227 784 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 AC090246.1-201ENST00000616499 426 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 MIR6852-201ENST00000621699 66 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.78□□□□□ -1.64
BRCA1P38398 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 AL672167.1-203ENST00000641299 2975 ntBASIC4.78□□□□□ -1.64
BRCA1P38398 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.78□□□□□ -1.64
BRCA1P38398 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRCA1P38398 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
BRCA1P38398 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BRCA1P38398 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BRCA1P38398 RN7SKP74-201ENST00000362849 309 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 AL359643.1-201ENST00000404109 423 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.77□□□□□ -1.65
BRCA1P38398 AL121878.1-201ENST00000418638 859 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC4.77□□□□□ -1.65
BRCA1P38398 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.77□□□□□ -1.65
BRCA1P38398 UBDP1-202ENST00000457888 382 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 AC135999.1-201ENST00000478962 479 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.77□□□□□ -1.65
BRCA1P38398 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.77□□□□□ -1.65
BRCA1P38398 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.77□□□□□ -1.65
BRCA1P38398 AC012417.1-201ENST00000582307 1039 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
BRCA1P38398 AP002001.2-201ENST00000529025 1469 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.77□□□□□ -1.65
BRCA1P38398 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BRCA1P38398 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
BRCA1P38398 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
BRCA1P38398 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BRCA1P38398 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BRCA1P38398 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.77□□□□□ -1.65
BRCA1P38398 AC006484.1-201ENST00000435086 1884 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
BRCA1P38398 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
BRCA1P38398 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
BRCA1P38398 AL391219.1-201ENST00000422570 483 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 RPL37P3-201ENST00000456825 293 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 RNU7-143P-201ENST00000516781 65 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 MIR4325-201ENST00000583049 90 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 AC119674.1-207ENST00000641355 633 ntBASIC4.77□□□□□ -1.65
BRCA1P38398 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BRCA1P38398 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
BRCA1P38398 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
BRCA1P38398 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BRCA1P38398 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
BRCA1P38398 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
BRCA1P38398 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BRCA1P38398 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BRCA1P38398 AC117434.1-201ENST00000419971 836 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.76□□□□□ -1.65
BRCA1P38398 CYCSP35-201ENST00000451978 304 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 AP001486.1-201ENST00000463339 476 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 RPL23AP65-201ENST00000475608 468 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.76□□□□□ -1.65
BRCA1P38398 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.76□□□□□ -1.65
BRCA1P38398 AC063950.1-201ENST00000552036 308 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.76□□□□□ -1.65
BRCA1P38398 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.76□□□□□ -1.65
BRCA1P38398 AC010680.3-201ENST00000604215 520 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 AC064801.1-201ENST00000612025 407 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 AC019278.1-201ENST00000623516 479 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
BRCA1P38398 HSPD1P14-201ENST00000432666 1618 ntBASIC4.76□□□□□ -1.65
BRCA1P38398 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
BRCA1P38398 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
BRCA1P38398 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
BRCA1P38398 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
BRCA1P38398 MIR199A2-201ENST00000385289 110 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms