Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 MIR525-201ENST00000384978 85 ntBASIC5.28□□□□□ -1.56
MSX2P35548 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 AL133260.1-201ENST00000405720 405 ntBASIC5.28□□□□□ -1.56
MSX2P35548 RNA5SP431-201ENST00000410312 120 ntBASIC5.28□□□□□ -1.56
MSX2P35548 RNU6-77P-201ENST00000410554 91 ntBASIC5.28□□□□□ -1.56
MSX2P35548 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 NPM1P4-201ENST00000414095 812 ntBASIC5.28□□□□□ -1.56
MSX2P35548 MRPL53P1-201ENST00000414323 319 ntBASIC5.28□□□□□ -1.56
MSX2P35548 RNF10P1-201ENST00000418589 369 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AP001324.1-201ENST00000428553 399 ntBASIC5.28□□□□□ -1.56
MSX2P35548 CDY14P-201ENST00000431260 1014 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AL050321.1-201ENST00000432363 400 ntBASIC5.28□□□□□ -1.56
MSX2P35548 SEPT7P5-201ENST00000434048 306 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 TIMM8BP2-201ENST00000445940 251 ntBASIC5.28□□□□□ -1.56
MSX2P35548 VN1R10P-201ENST00000447106 875 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 CDY23P-201ENST00000451661 1014 ntBASIC5.28□□□□□ -1.56
MSX2P35548 ELOCP23-201ENST00000452014 332 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC118758.1-202ENST00000454719 225 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC245028.2-201ENST00000458673 253 ntBASIC5.28□□□□□ -1.56
MSX2P35548 TMED11P-201ENST00000479478 690 ntBASIC5.28□□□□□ -1.56
MSX2P35548 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 ATP5LP5-201ENST00000483050 299 ntBASIC5.28□□□□□ -1.56
MSX2P35548 VPS26AP1-201ENST00000483197 979 ntBASIC5.28□□□□□ -1.56
MSX2P35548 EIF3LP3-201ENST00000495197 822 ntBASIC5.28□□□□□ -1.56
MSX2P35548 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 DUTP7-201ENST00000507982 486 ntBASIC5.28□□□□□ -1.56
MSX2P35548 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC074344.1-201ENST00000512823 224 ntBASIC5.28□□□□□ -1.56
MSX2P35548 RPL7L1P4-201ENST00000513004 707 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC114781.4-201ENST00000513707 639 ntBASIC5.28□□□□□ -1.56
MSX2P35548 RN7SKP70-201ENST00000516655 271 ntBASIC5.28□□□□□ -1.56
MSX2P35548 CDC42P3-201ENST00000518493 633 ntBASIC5.28□□□□□ -1.56
MSX2P35548 IGHV3-32-201ENST00000519182 355 ntBASIC5.28□□□□□ -1.56
MSX2P35548 IGJP1-201ENST00000522682 475 ntBASIC5.28□□□□□ -1.56
MSX2P35548 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.28□□□□□ -1.56
MSX2P35548 AC121758.1-202ENST00000556917 658 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 MIR4271-201ENST00000582451 67 ntBASIC5.28□□□□□ -1.56
MSX2P35548 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.28□□□□□ -1.56
MSX2P35548 BNIP3P33-201ENST00000598912 569 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC012065.4-201ENST00000602445 679 ntBASIC5.28□□□□□ -1.56
MSX2P35548 IMMP1LP1-201ENST00000605170 488 ntBASIC5.28□□□□□ -1.56
MSX2P35548 MIR6809-201ENST00000612189 116 ntBASIC5.28□□□□□ -1.56
MSX2P35548 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
MSX2P35548 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 AC099654.14-201ENST00000638599 341 ntBASIC5.28□□□□□ -1.56
MSX2P35548 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 MTND5P26-201ENST00000426018 1752 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AL079343.1-201ENST00000572358 1771 ntBASIC5.28□□□□□ -1.56
MSX2P35548 AC004817.4-201ENST00000602396 3625 ntBASIC5.28□□□□□ -1.56
MSX2P35548 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX2P35548 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX2P35548 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
MSX2P35548 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX2P35548 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX2P35548 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSX2P35548 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX2P35548 Z95114.1-201ENST00000624264 14574 ntBASIC5.27□□□□□ -1.57
MSX2P35548 HMGB1P5-201ENST00000255320 642 ntBASIC5.27□□□□□ -1.57
MSX2P35548 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL159987.1-201ENST00000347911 293 ntBASIC5.27□□□□□ -1.57
MSX2P35548 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSX2P35548 RNU6-249P-201ENST00000363016 102 ntBASIC5.27□□□□□ -1.57
MSX2P35548 U3.7-201ENST00000363668 216 ntBASIC5.27□□□□□ -1.57
MSX2P35548 Y_RNA.302-201ENST00000364997 102 ntBASIC5.27□□□□□ -1.57
MSX2P35548 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.27□□□□□ -1.57
MSX2P35548 RNU6-114P-201ENST00000384704 105 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX2P35548 Z97055.1-201ENST00000419730 712 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX2P35548 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.27□□□□□ -1.57
MSX2P35548 RIMKLBP2-201ENST00000424737 654 ntBASIC5.27□□□□□ -1.57
MSX2P35548 BLOC1S2P1-201ENST00000428431 301 ntBASIC5.27□□□□□ -1.57
MSX2P35548 MTND3P21-201ENST00000433774 331 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL512286.1-201ENST00000439244 400 ntBASIC5.27□□□□□ -1.57
MSX2P35548 UBE2V1P3-201ENST00000439651 417 ntBASIC5.27□□□□□ -1.57
MSX2P35548 EIF5AP4-201ENST00000441206 465 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC5.27□□□□□ -1.57
MSX2P35548 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.27□□□□□ -1.57
MSX2P35548 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.27□□□□□ -1.57
MSX2P35548 GEMIN2P1-201ENST00000454246 752 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.27□□□□□ -1.57
MSX2P35548 PNPLA4P1-201ENST00000458328 305 ntBASIC5.27□□□□□ -1.57
MSX2P35548 RN7SL188P-201ENST00000469842 285 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.27□□□□□ -1.57
MSX2P35548 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.27□□□□□ -1.57
MSX2P35548 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.27□□□□□ -1.57
MSX2P35548 RPL37P23-201ENST00000492641 294 ntBASIC5.27□□□□□ -1.57
MSX2P35548 IGBP1P5-201ENST00000507524 1000 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms