Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC111000.3-201ENST00000508057 576 ntBASIC5.21□□□□□ -1.58
CIITAP33076 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC5.21□□□□□ -1.58
CIITAP33076 AC119751.5-201ENST00000514077 770 ntBASIC5.21□□□□□ -1.58
CIITAP33076 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC5.21□□□□□ -1.58
CIITAP33076 RN7SKP92-201ENST00000517266 244 ntBASIC5.21□□□□□ -1.58
CIITAP33076 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.21□□□□□ -1.58
CIITAP33076 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CIITAP33076 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.21□□□□□ -1.58
CIITAP33076 RN7SL52P-201ENST00000584271 284 ntBASIC5.21□□□□□ -1.58
CIITAP33076 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.21□□□□□ -1.58
CIITAP33076 AC115286.1-201ENST00000604298 434 ntBASIC5.21□□□□□ -1.58
CIITAP33076 AC097065.2-201ENST00000608159 533 ntBASIC5.21□□□□□ -1.58
CIITAP33076 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.21□□□□□ -1.58
CIITAP33076 AC097478.2-201ENST00000610572 514 ntBASIC5.21□□□□□ -1.58
CIITAP33076 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.21□□□□□ -1.58
CIITAP33076 AC100847.1-201ENST00000611316 481 ntBASIC5.21□□□□□ -1.58
CIITAP33076 RMST_10.1-201ENST00000616309 154 ntBASIC5.21□□□□□ -1.58
CIITAP33076 RN7SL722P-201ENST00000617780 284 ntBASIC5.21□□□□□ -1.58
CIITAP33076 RN7SL565P-201ENST00000618246 284 ntBASIC5.21□□□□□ -1.58
CIITAP33076 AC022079.1-201ENST00000621546 602 ntBASIC5.21□□□□□ -1.58
CIITAP33076 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC5.21□□□□□ -1.58
CIITAP33076 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.21□□□□□ -1.58
CIITAP33076 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.21□□□□□ -1.58
CIITAP33076 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.21□□□□□ -1.58
CIITAP33076 MFSD8-220ENST00000641243 1422 ntBASIC5.21□□□□□ -1.58
CIITAP33076 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.2□□□□□ -1.58
CIITAP33076 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.2□□□□□ -1.58
CIITAP33076 AL391684.1-202ENST00000641293 1636 ntBASIC5.2□□□□□ -1.58
CIITAP33076 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.2□□□□□ -1.58
CIITAP33076 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 SNORA71.2-201ENST00000364941 134 ntBASIC5.2□□□□□ -1.58
CIITAP33076 MIR659-201ENST00000384963 97 ntBASIC5.2□□□□□ -1.58
CIITAP33076 GLULP6-201ENST00000399502 913 ntBASIC5.2□□□□□ -1.58
CIITAP33076 RNU4-74P-201ENST00000411280 161 ntBASIC5.2□□□□□ -1.58
CIITAP33076 MTATP6P20-201ENST00000414147 562 ntBASIC5.2□□□□□ -1.58
CIITAP33076 UQCRBP1-201ENST00000421129 336 ntBASIC5.2□□□□□ -1.58
CIITAP33076 RPL21P43-201ENST00000425440 472 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AL035246.1-201ENST00000433554 1255 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC5.2□□□□□ -1.58
CIITAP33076 Z77249.1-201ENST00000444622 1175 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AL935212.3-201ENST00000450729 284 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AC243772.1-201ENST00000451620 410 ntBASIC5.2□□□□□ -1.58
CIITAP33076 RNU7-27P-201ENST00000459281 62 ntBASIC5.2□□□□□ -1.58
CIITAP33076 MTCO3P35-201ENST00000485582 781 ntBASIC5.2□□□□□ -1.58
CIITAP33076 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 RNU6-1308P-201ENST00000516817 103 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.2□□□□□ -1.58
CIITAP33076 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.2□□□□□ -1.58
CIITAP33076 AP001781.1-201ENST00000530977 207 ntBASIC5.2□□□□□ -1.58
CIITAP33076 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC5.2□□□□□ -1.58
CIITAP33076 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.2□□□□□ -1.58
CIITAP33076 AC079075.1-201ENST00000559543 878 ntBASIC5.2□□□□□ -1.58
CIITAP33076 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.2□□□□□ -1.58
CIITAP33076 AC084783.1-201ENST00000565846 910 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.2□□□□□ -1.58
CIITAP33076 AC209154.1-201ENST00000582156 337 ntBASIC5.2□□□□□ -1.58
CIITAP33076 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.2□□□□□ -1.58
CIITAP33076 RN7SL622P-201ENST00000585292 275 ntBASIC5.2□□□□□ -1.58
CIITAP33076 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.2□□□□□ -1.58
CIITAP33076 AC008782.1-201ENST00000603386 430 ntBASIC5.2□□□□□ -1.58
CIITAP33076 RNF138P2-201ENST00000603490 592 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AC008745.1-201ENST00000604064 271 ntBASIC5.2□□□□□ -1.58
CIITAP33076 IMMP1LP1-201ENST00000605170 488 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AC019193.2-201ENST00000610012 634 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.2□□□□□ -1.58
CIITAP33076 AP002791.1-201ENST00000623291 381 ntBASIC5.2□□□□□ -1.58
CIITAP33076 MTND2P41-201ENST00000637599 773 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AC017104.5-201ENST00000637647 639 ntBASIC5.2□□□□□ -1.58
CIITAP33076 AC132825.7-201ENST00000638744 335 ntBASIC5.2□□□□□ -1.58
CIITAP33076 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
CIITAP33076 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.2□□□□□ -1.58
CIITAP33076 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CIITAP33076 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CIITAP33076 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.19□□□□□ -1.58
CIITAP33076 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CIITAP33076 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CIITAP33076 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CIITAP33076 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CIITAP33076 RN7SKP115-201ENST00000363177 317 ntBASIC5.19□□□□□ -1.58
CIITAP33076 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CIITAP33076 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CIITAP33076 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC5.19□□□□□ -1.58
CIITAP33076 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.19□□□□□ -1.58
CIITAP33076 AC008173.1-201ENST00000418901 264 ntBASIC5.19□□□□□ -1.58
CIITAP33076 RPL36AP10-201ENST00000421785 322 ntBASIC5.19□□□□□ -1.58
CIITAP33076 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.19□□□□□ -1.58
CIITAP33076 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC5.19□□□□□ -1.58
CIITAP33076 RPEP3-201ENST00000425462 676 ntBASIC5.19□□□□□ -1.58
CIITAP33076 MTCO3P21-201ENST00000430791 643 ntBASIC5.19□□□□□ -1.58
CIITAP33076 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.19□□□□□ -1.58
CIITAP33076 MTCO2P20-201ENST00000437339 673 ntBASIC5.19□□□□□ -1.58
CIITAP33076 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.19□□□□□ -1.58
CIITAP33076 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms