Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.21□□□□□ -1.9
HLA-DMBP28068 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DMBP28068 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 FAM3C2-201ENST00000312214 681 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 SNORA70.2-201ENST00000364506 135 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 RNA5SP239-201ENST00000410218 129 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 RBMY1KP-201ENST00000423480 476 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC093698.1-201ENST00000423843 571 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 RPL23AP4-201ENST00000427757 463 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 RPL12P46-201ENST00000436610 195 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 RPL23AP89-201ENST00000439324 255 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 EXTL2P1-201ENST00000446218 416 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 PHBP16-201ENST00000446318 950 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 RPL7P32-201ENST00000457119 744 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 RN7SL585P-201ENST00000470538 280 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 RPS29P19-201ENST00000479709 171 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC068587.1-201ENST00000483613 781 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 RPS26P15-201ENST00000488067 348 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 RN7SL810P-201ENST00000493031 276 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC138701.1-201ENST00000524329 714 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC091515.1-201ENST00000548110 679 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC068831.4-201ENST00000556118 109 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC021483.2-201ENST00000567415 758 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC009101.1-201ENST00000568135 242 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 MIR4644-201ENST00000579929 84 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 KPNA2P3-201ENST00000584190 848 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC113403.1-201ENST00000604910 193 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AL592494.3-201ENST00000609485 464 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC015922.4-201ENST00000612568 690 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AL359715.5-201ENST00000623431 443 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC011944.2-201ENST00000624440 683 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 AC009313.2-201ENST00000417893 1941 ntBASIC3.2□□□□□ -1.9
HLA-DMBP28068 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
HLA-DMBP28068 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DMBP28068 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DMBP28068 CYP1D1P-201ENST00000416662 1433 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DMBP28068 OR4K17-201ENST00000315543 1032 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DMBP28068 RNU6-697P-201ENST00000363348 107 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 RNU6-167P-201ENST00000384292 106 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 SNORA37-201ENST00000384504 129 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 RNA5SP306-201ENST00000411087 107 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC011933.1-201ENST00000413334 321 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 EIF1P3-201ENST00000423841 334 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 RPS29P17-201ENST00000430795 166 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 BTG3P1-201ENST00000435859 716 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 GSTA7P-201ENST00000438425 448 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 PPIAP17-201ENST00000438507 471 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 ELOCP8-201ENST00000439309 332 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 ELOCP15-201ENST00000442090 332 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC239809.1-201ENST00000450470 217 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC116533.1-201ENST00000459748 321 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 RPL21P71-201ENST00000465598 459 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 RN7SL303P-201ENST00000469773 251 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC010374.1-201ENST00000503762 1237 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC020593.1-201ENST00000507399 299 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 IGBP1P5-201ENST00000507524 1000 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC017037.1-201ENST00000508460 471 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 RN7SKP122-201ENST00000515923 296 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC010476.1-201ENST00000519111 851 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms