Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A1P12109 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A1P12109 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A1P12109 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A1P12109 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A1P12109 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A1P12109 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A1P12109 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
COL6A1P12109 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.95□□□□□ -1.46
COL6A1P12109 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC017007.4-201ENST00000503353 1352 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 RNU6-452P-201ENST00000384406 107 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 NPM1P11-201ENST00000417106 855 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC099336.2-201ENST00000422457 254 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A1P12109 AL591503.2-201ENST00000442314 1005 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AP000936.2-201ENST00000447151 681 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC099560.2-201ENST00000457554 255 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 RPS7P7-201ENST00000463499 571 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 CCDC75P1-201ENST00000469247 791 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 RPL7P41-201ENST00000485823 957 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 IRF5P1-201ENST00000504852 2164 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC108475.1-201ENST00000507880 950 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC008549.1-201ENST00000512900 643 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 NDUFA5P2-201ENST00000519723 344 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC021006.3-201ENST00000530771 192 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AP000873.5-201ENST00000533906 236 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AP000619.3-201ENST00000535634 1127 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A1P12109 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A1P12109 YWHABP2-201ENST00000540201 713 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 UBE2NP1-201ENST00000545592 458 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC137627.1-201ENST00000545761 289 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A1P12109 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A1P12109 MIR4999-201ENST00000585029 91 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 VN1R84P-201ENST00000593697 235 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AL031320.1-201ENST00000604177 357 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 VN1R74P-201ENST00000613259 503 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC008443.7-201ENST00000622195 246 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 AC015908.5-201ENST00000623289 343 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 AC022164.1-201ENST00000568767 2673 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A1P12109 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
COL6A1P12109 AC010329.2-201ENST00000595195 2737 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 MAPK10-338ENST00000641647 3362 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
COL6A1P12109 DDX18P4-201ENST00000511690 1966 ntBASIC5.95□□□□□ -1.46
COL6A1P12109 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A1P12109 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL6A1P12109 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A1P12109 RNA5SP505-201ENST00000364748 108 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AC068538.1-201ENST00000376856 336 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 RNU6-185P-201ENST00000384421 107 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 RPL23AP59-201ENST00000399415 461 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A1P12109 RNU6-603P-201ENST00000411403 107 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 TAF13P2-201ENST00000416876 286 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A1P12109 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A1P12109 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A1P12109 OR2B8P-201ENST00000432841 938 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 RPS24P1-201ENST00000438550 371 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 MTND3P1-201ENST00000441336 220 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 HMGB1P5-202ENST00000451497 985 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 SUMO2P2-201ENST00000456482 255 ntBASIC5.94□□□□□ -1.46
COL6A1P12109 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms