Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 BNIP3P41-201ENST00000503774 571 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AC017037.1-201ENST00000508460 471 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 PGBD4P4-201ENST00000509673 613 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AC108120.2-201ENST00000512973 294 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 RNU6-760P-201ENST00000516078 97 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 RNA5SP73-201ENST00000516744 108 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.12□□□□□ -1.75
CLDN9O95484 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.12□□□□□ -1.75
CLDN9O95484 AC069240.1-201ENST00000548774 375 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.12□□□□□ -1.75
CLDN9O95484 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN9O95484 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.12□□□□□ -1.75
CLDN9O95484 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN9O95484 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.12□□□□□ -1.75
CLDN9O95484 AC110743.1-201ENST00000584870 478 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.12□□□□□ -1.75
CLDN9O95484 AC090525.3-201ENST00000605601 189 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 MIR378J-201ENST00000611988 109 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AC139769.3-201ENST00000618383 175 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN9O95484 MIR7702-201ENST00000621931 59 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.12□□□□□ -1.75
CLDN9O95484 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLDN9O95484 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
CLDN9O95484 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.12□□□□□ -1.75
CLDN9O95484 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
CLDN9O95484 CCT8P1-201ENST00000413611 1657 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CLDN9O95484 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
CLDN9O95484 AC087190.4-201ENST00000574616 8334 ntBASIC4.12□□□□□ -1.75
CLDN9O95484 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.11□□□□□ -1.75
CLDN9O95484 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 AC083799.1-201ENST00000366451 910 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 MIR192-201ENST00000384915 110 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 MIR708-201ENST00000390708 88 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 RPS27AP11-201ENST00000402798 447 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 FAR2P2-201ENST00000413041 594 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 GAPDHP49-201ENST00000421421 961 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 FAR2P4-202ENST00000425399 584 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 AL157831.1-201ENST00000426134 473 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 AL138878.2-201ENST00000440581 1241 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.11□□□□□ -1.75
CLDN9O95484 AC239809.1-201ENST00000450470 217 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.11□□□□□ -1.75
CLDN9O95484 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.11□□□□□ -1.75
CLDN9O95484 RPL7P48-201ENST00000461513 746 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 RPL23AP12-201ENST00000467573 473 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.11□□□□□ -1.75
CLDN9O95484 PPM1AP1-201ENST00000502740 1135 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 RNU6-889P-201ENST00000517189 103 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.11□□□□□ -1.75
CLDN9O95484 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.11□□□□□ -1.75
CLDN9O95484 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.11□□□□□ -1.75
CLDN9O95484 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.11□□□□□ -1.75
CLDN9O95484 AC067805.1-201ENST00000559344 470 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 MTATP6P25-201ENST00000574491 261 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.11□□□□□ -1.75
CLDN9O95484 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.11□□□□□ -1.75
CLDN9O95484 AF230666.2-201ENST00000602328 725 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 AC011472.4-201ENST00000615848 491 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.11□□□□□ -1.75
CLDN9O95484 AC008013.2-202ENST00000637965 364 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 AL139254.3-201ENST00000641097 674 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
CLDN9O95484 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.11□□□□□ -1.75
CLDN9O95484 EIF2AP4-201ENST00000424793 1781 ntBASIC4.11□□□□□ -1.75
CLDN9O95484 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.11□□□□□ -1.75
CLDN9O95484 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
CLDN9O95484 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.11□□□□□ -1.75
CLDN9O95484 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
CLDN9O95484 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN9O95484 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.1□□□□□ -1.75
CLDN9O95484 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN9O95484 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.1□□□□□ -1.75
CLDN9O95484 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.1□□□□□ -1.75
CLDN9O95484 MFSD8-216ENST00000641147 4009 ntBASIC4.1□□□□□ -1.75
CLDN9O95484 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN9O95484 AC126755.2-208ENST00000327792 462 ntBASIC4.1□□□□□ -1.75
CLDN9O95484 AC138969.1-213ENST00000331436 462 ntBASIC4.1□□□□□ -1.75
CLDN9O95484 SNORA27.3-201ENST00000364937 134 ntBASIC4.1□□□□□ -1.75
CLDN9O95484 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN9O95484 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN9O95484 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CLDN9O95484 AL583835.1-201ENST00000399570 407 ntBASIC4.1□□□□□ -1.75
CLDN9O95484 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.1□□□□□ -1.75
CLDN9O95484 AC009965.2-201ENST00000425328 970 ntBASIC4.1□□□□□ -1.75
CLDN9O95484 IPMKP1-201ENST00000425988 855 ntBASIC4.1□□□□□ -1.75
CLDN9O95484 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.1□□□□□ -1.75
CLDN9O95484 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN9O95484 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.1□□□□□ -1.75
CLDN9O95484 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms