Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC092079.1-201ENST00000558620 1985 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AL137100.1-201ENST00000556703 1620 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 THAP12P4-201ENST00000528321 2266 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC092435.4-201ENST00000623012 4159 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 TLK1P1-201ENST00000456760 2440 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC090971.4-201ENST00000560291 1800 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 RNA5SP123-201ENST00000363244 119 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 RNU6-317P-201ENST00000384031 107 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 GTF2IP5-201ENST00000414608 731 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AL449283.1-202ENST00000418249 604 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 OR2AM1P-201ENST00000422137 422 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 CDY14P-201ENST00000431260 1014 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC092170.1-201ENST00000440211 356 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 CDY12P-201ENST00000440679 1015 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 CDY13P-201ENST00000445813 1015 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC005002.1-201ENST00000447458 540 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 CDY23P-201ENST00000451661 1014 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 DUXAP8-207ENST00000456786 622 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 RNU7-140P-201ENST00000459546 60 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC005912.1-201ENST00000495392 255 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC111193.1-201ENST00000504097 155 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC134698.5-201ENST00000519444 336 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 MTND2P32-201ENST00000521584 1038 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 OR8I1P-201ENST00000529291 931 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC107918.3-201ENST00000533272 382 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AL158211.1-201ENST00000566763 763 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 TVP23CP2-201ENST00000571473 623 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 MIR3934-201ENST00000579806 107 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 RN7SL176P-201ENST00000580352 264 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC011447.4-201ENST00000587562 111 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 MTCO2P2-201ENST00000591258 225 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 BNIP3P32-201ENST00000600015 554 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 Z82195.1-201ENST00000604558 398 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC010424.2-201ENST00000607594 443 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 DUXAP10-204ENST00000612052 616 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 MIR7973-1-201ENST00000614683 76 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 uc_338.18-201ENST00000615451 175 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 STMN1P1-201ENST00000617809 440 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC091905.4-201ENST00000623432 202 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 AP001784.1-201ENST00000624107 428 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AL121594.5-201ENST00000631724 573 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.1□□□□□ -1.75
NKX3-1Q99801 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.1□□□□□ -1.75
NKX3-1Q99801 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NKX3-1Q99801 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC099654.2-201ENST00000433031 1980 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL136164.3-201ENST00000624429 3978 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 DHX9P1-201ENST00000436565 3076 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL451142.2-201ENST00000429076 2090 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 MAPK10-286ENST00000641208 8747 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 RNU1-94P-201ENST00000362627 173 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 RNU6-353P-201ENST00000364266 108 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 USP9YP21-201ENST00000420603 432 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL645608.4-201ENST00000423619 154 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 OR2B7P-201ENST00000429302 934 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms